| Rank | Active Teams | Nicknames | City | St | 2011 Div | 2011 Conference | W | L | Pct | Notes |
| 1 | Mount Union | Purple Raiders | Alliance | OH | D3 | Ohio Athletic | 139 | 7 | 0.952 | D3 Champions 2002, 2005, 2006, 2008 |
| 2 | Carroll MT | Saints | Helena | MT | NAIA | Frontier | 131 | 10 | 0.929 | NAIA Champions 2002, 2003, 2004, 2005, 2007, 2010 |
| 3 | Sioux Falls | Cougars | Sioux Falls | SD | D2 | D-II Independents | 120 | 11 | 0.916 | Moved from NAIA to D2 in 2011- NAIA Champs 2006, 08, 09 |
| 4 | Boise St | Broncos | Boise | ID | 1A | Mountain West | 118 | 12 | 0.908 | |
| 5 | Grand Valley St | Lakers | Allendale | MI | D2 | Great Lakes Intercoll. | 121 | 13 | 0.903 | D2 Champions 2002, 2003, 2005, 2006 |
| 6 | Trinity CT | Bantams | Hartford | CT | D3-d | New England Small | 72 | 8 | 0.900 | Disconnected |
| 7 | UW-Whitewater | Warhawks | Whitewater | WI | D3 | Wisconsin Intercoll. | 119 | 16 | 0.881 | D3 Champions 2007, 2009, 2010, 2011 |
| 8 | St Francis IN | Cougars | Fort Wayne | IN | NAIA | Mid-States | 111 | 16 | 0.874 | |
| 9 | Mary Hardin-Baylor | Crusaders | Belton | TX | D3 | American Southwest | 109 | 17 | 0.865 | |
| 10 | Linfield | Wildcats | McMinnville | OR | D3 | Northwest | 93 | 16 | 0.853 | D3 Champion 2004 |
| 11 | Southern California | Trojans | Los Angeles | CA | 1A | Pacific 12 | 109 | 19 | 0.852 | BCS Champion 2004 |
| 12 | NW Missouri St | Bearcats | Maryville | MO | D2 | Mid-America Intercoll. | 118 | 21 | 0.849 | D2 Champion 2009 |
| 13 | Wabash | Little Giants | Crawfordsville | IN | D3 | North Coast Athletic | 94 | 20 | 0.825 | |
| 14 | St Norbert | Green Knights | De Pere | WI | D3 | Midwest | 87 | 19 | 0.821 | |
| 15 | St John's MN | Johnnies | Collegeville | MN | D3 | Minnesota Intercoll. | 96 | 21 | 0.821 | D3 Champion 2003 |
| 15 | MidAmerica Nazarene | Pioneers | Olathe | KS | NAIA | Heart of America | 96 | 21 | 0.821 | |
| 17 | Wesley | Wolverines | Dover | DE | D3 | D-III Independents | 100 | 22 | 0.820 | |
| 18 | Washington & Jefferson | Presidents | Washington | PA | D3 | The Presidents' Athl. | 94 | 21 | 0.817 | |
| 19 | Texas Christian | Horned Frogs | Fort Worth | TX | 1A | Mountain West | 102 | 23 | 0.816 | |
| 20 | Ohio St | Buckeyes | Columbus | OH | 1A | Big 10 | 104 | 24 | 0.813 | BCS Champion 2002 |
| 21 | Wheaton | Thunder | Wheaton | IL | D3 | Conf.of Ill. and Wisc. | 93 | 22 | 0.809 | |
| 22 | Montana | Grizzlies | Missoula | MT | 1AA | Big Sky | 109 | 27 | 0.801 | |
| 23 | Valdosta St | Blazers | Valdosta | GA | D2 | Gulf South | 96 | 24 | 0.800 | D2 Champions 2004, 2007 |
| 23 | South Alabama | Jaguars | Mobile | AL | 1AA | I-AA Independents | 16 | 4 | 0.800 | new program 2010 |
| 23 | Williams | Ephs | Williamstown | MA | D3-d | New England Small | 64 | 16 | 0.800 | Disconnected |
| 26 | Oklahoma | Sooners | Norman | OK | 1A | Big 12 | 107 | 27 | 0.799 | |
| 27 | Texas | Longhorns | Austin | TX | 1A | Big 12 | 102 | 26 | 0.797 | BCS Champion 2005 |
| 28 | LSU | Tigers | Baton Rouge | LA | 1A | Southeastern | 104 | 27 | 0.794 | BCS Champions 2003, 2007 |
| 29 | Wartburg | Knights | Waverly | IA | D3 | Iowa Intercollegiate | 86 | 23 | 0.789 | |
| 29 | Trinity TX | Tigers | San Antonio | TX | D3 | Southern Coll. Athl. | 86 | 23 | 0.789 | |
| 31 | Tuskegee | Golden Tigers | Tuskegee | AL | D2 | Southern Intercoll. | 89 | 24 | 0.788 | |
| 32 | St Xavier | Cougars | Chicago | IL | NAIA | Mid-States | 99 | 27 | 0.786 | NAIA Champion 2011 |
| 32 | North Central | Cardinals | Naperville | IL | D3 | Conf.of Ill. and Wisc. | 88 | 24 | 0.786 | |
| 34 | Bloomsburg | Huskies | Bloomsburg | PA | D2 | Pennsylvania State | 90 | 25 | 0.783 | |
| 35 | Harvard | Crimson | Cambridge | MA | 1AA | Ivy League | 78 | 22 | 0.780 | |
| 36 | Curry | Colonels | Milton | MA | D3 | New England | 88 | 25 | 0.779 | |
| 37 | Monmouth IL | Scots | Monmouth | IL | D3 | Midwest | 82 | 24 | 0.774 | |
| 38 | Dayton | Flyers | Dayton | OH | 1AA | Pioneer | 85 | 25 | 0.773 | |
| 39 | Old Dominion | Monarchs | Norfolk | VA | 1AA | Colonial Athletic | 27 | 8 | 0.771 | new program 2009 |
| 40 | Hampden-Sydney | Tigers | Hampden Sydney | VA | D3 | Old Dominion Athl. | 80 | 24 | 0.769 | |
| 41 | Central IA | Dutch | Pella | IA | D3 | Iowa Intercollegiate | 81 | 25 | 0.764 | |
| 42 | Georgetown KY | Tigers | Georgetown | KY | NAIA | Mid-South | 89 | 28 | 0.761 | |
| 43 | North Alabama | Lions | Florence | AL | D2 | Gulf South | 95 | 30 | 0.760 | |
| 44 | St John Fisher | Cardinals | Rochester | NY | D3 | Empire Eight | 88 | 28 | 0.759 | |
| 45 | Appalachian St | Mountaineers | Boone | NC | 1AA | Southern | 100 | 32 | 0.758 | FCS Champions 2005, 2006, 2007 |
| 46 | Northwestern IA | Red Raiders | Orange City | IA | NAIA | Great Plains Athl. | 81 | 26 | 0.757 | |
| 46 | Wittenberg | Tigers | Springfield | OH | D3 | North Coast Athletic | 81 | 26 | 0.757 | |
| 48 | Hardin-Simmons | Cowboys | Abilene | TX | D3 | American Southwest | 77 | 25 | 0.755 | |
| 49 | Virginia Tech | Hokies | Blacksburg | VA | 1A | Atlantic Coast | 101 | 33 | 0.754 | |
| 50 | Carson-Newman | Eagles | Jefferson City | TN | D2 | South Atlantic | 88 | 29 | 0.752 | |
| 51 | Pittsburg St | Gorillas | Pittsburg | KS | D2 | Mid-America Intercoll. | 94 | 31 | 0.752 | D2 Champion 2011 |
| 52 | Chadron St | Eagles | Chadron | NE | D2 | Rocky Mountain | 84 | 28 | 0.750 | |
| 52 | Albany St GA | Golden Rams | Albany | GA | D2 | Southern Intercoll. | 84 | 28 | 0.750 | |
| 54 | Georgia | Bulldogs | Athens | GA | 1A | Southeastern | 98 | 33 | 0.748 | |
| 55 | Minnesota-Duluth | Bulldogs | Duluth | MN | D2 | Northern Sun Intercoll. | 92 | 31 | 0.748 | D2 Champions 2008, 2010 |
| 56 | Delaware Valley | Aggies | Doylestown | PA | D3 | Middle Atlantic | 86 | 29 | 0.748 | |
| 57 | Salisbury | Seagulls | Salisbury | MD | D3 | Empire Eight | 81 | 28 | 0.743 | |
| 57 | Bridgewater VA | Eagles | Bridgewater | VA | D3 | Old Dominion Athl. | 81 | 28 | 0.743 | |
| 59 | Hobart | Statesmen | Geneva | NY | D3 | Liberty League | 75 | 26 | 0.743 | |
| 60 | West Virginia | Mountaineers | Morgantown | WV | 1A | Big East | 94 | 33 | 0.740 | |
| 61 | Occidental | Tigers | Los Angeles | CA | D3 | So. California Intercoll. | 71 | 25 | 0.740 | |
| 62 | Morningside | Mustangs | Sioux Falls | IA | NAIA | Great Plains Athl. | 85 | 30 | 0.739 | |
| 63 | Shepherd | Rams | Shepherdstown | WV | D2 | West Virginia Intercoll. | 82 | 29 | 0.739 | |
| 64 | Johns Hopkins | Blue Jays | Baltimore | MD | D3 | Centennial | 81 | 29 | 0.736 | |
| 65 | Auburn | Tigers | Auburn | AL | 1A | Southeastern | 94 | 34 | 0.734 | BCS Champion 2010 |
| 66 | Rowan | Professors | Glassboro | NJ | D3 | New Jersey Athl. | 80 | 29 | 0.734 | |
| 66 | Cortland St | Red Dragons | Cortland | NY | D3 | New Jersey Athl. | 80 | 29 | 0.734 | |
| 68 | Utah | Utes | Salt Lake City | UT | 1A | Pacific 12 | 91 | 33 | 0.734 | |
| 69 | California PA | Vulcans | California | PA | D2 | Pennsylvania State | 88 | 33 | 0.727 | |
| 70 | Central Washington | Wildcats | Ellensburg | WA | D2 | Great Northwest Athl. | 82 | 31 | 0.726 | |
| 71 | Florida | Gators | Gainesville | FL | 1A | Southeastern | 94 | 36 | 0.723 | BCS Champions 2006, 2008 |
| 72 | South Carolina St | Bulldogs | Orangeburg | SC | 1AA | Mid-Eastern Athletic | 83 | 33 | 0.716 | |
| 72 | Winona St | Warriors | Winona | MN | D2 | Northern Sun Intercoll. | 83 | 33 | 0.716 | |
| 74 | Wisconsin | Badgers | Madison | WI | 1A | Big 10 | 93 | 37 | 0.715 | |
| 75 | Montclair St | Red Hawks | Upper Montclair | NJ | D3 | New Jersey Athl. | 75 | 30 | 0.714 | |
| 76 | Amherst | Lord Jeffs | Amherst | MA | D3-d | New England Small | 57 | 23 | 0.713 | Disconnected |
| 77 | Midwestern St | Indians | Wichita Falls | TX | D2 | Lone Star | 79 | 32 | 0.712 | |
| 78 | San Diego | Toreros | San Diego | CA | 1AA | Pioneer | 78 | 32 | 0.709 | |
| 78 | Bethel MN | Royals | St. Paul | MN | D3 | Minnesota Intercoll. | 78 | 32 | 0.709 | |
| 80 | Oregon | Ducks | Eugene | OR | 1A | Pacific 12 | 90 | 37 | 0.709 | |
| 81 | Saginaw Valley St | Cardinals | University Center | MI | D2 | Great Lakes Intercoll. | 79 | 33 | 0.705 | |
| 82 | Colorado St-Pueblo | Thunderwolves | Pueblo | CO | D2 | Rocky Mountain | 31 | 13 | 0.705 | new program 2008 |
| 83 | Northern Iowa | Panthers | Cedar Falls | IA | 1AA | Missouri Valley | 88 | 37 | 0.704 | |
| 84 | Indiana PA | Indians | Indiana | PA | D2 | Pennsylvania State | 76 | 32 | 0.704 | |
| 84 | Southern Conn. St | Owls | New Haven | CT | D2 | Northeast-10 | 76 | 32 | 0.704 | |
| 84 | Northwestern Okla St | Rangers | Alva | OK | NAIA | Central States | 76 | 32 | 0.704 | |
| 87 | Grambling St | Tigers | Grambling | LA | 1AA | Southwestern Athletic | 83 | 35 | 0.703 | |
| 88 | Delta St | Statesmen | Cleveland | MS | D2 | Gulf South | 85 | 36 | 0.702 | |
| 89 | Ithaca | Bombers | Ithaca | NY | D3 | Empire Eight | 75 | 32 | 0.701 | |
| 89 | Cumberlands KY | Patriots | Williamsburg | KY | NAIA | Mid-South | 75 | 32 | 0.701 | |
| 91 | Nebraska-Kearney | Lopers | Kearney | NE | D2 | Rocky Mountain | 77 | 33 | 0.700 | |
| 91 | Missouri Valley | Vikings | Marshall | MO | NAIA | Heart of America | 77 | 33 | 0.700 | |
| 91 | RPI | Engineers | Troy | NY | D3 | Liberty League | 70 | 30 | 0.700 | |
| 94 | Bentley | Falcons | Waltham | MA | D2 | Northeast-10 | 72 | 31 | 0.699 | |
| 95 | Coe | Kohawks | Cedar Rapids | IA | D3 | Iowa Intercollegiate | 74 | 32 | 0.698 | |
| 96 | Alabama | Crimson Tide | Tuscaloosa | AL | 1A | Southeastern | 90 | 39 | 0.698 | BCS Champions 2009, 2011 |
| 97 | DePauw | Tigers | Greencastle | IN | D3 | North Coast Athletic | 69 | 30 | 0.697 | |
| 98 | Abilene Christian | Widcats | Abilene | TX | D2 | Lone Star | 78 | 34 | 0.696 | |
| 99 | Mount St Joseph | Lions | Cincinnati | OH | D3 | Heartland Coll. Athletic | 73 | 32 | 0.695 | |
| 100 | St Ambrose | Bees | Davenport | IA | NAIA | Mid-States | 75 | 33 | 0.694 | |
| 101 | Case Western | Spartans | Cleveland | OH | D3 | University Athletic | 72 | 32 | 0.692 | |
| 102 | Central Missouri | Mules | Warrensburg | MO | D2 | Mid-America Intercoll. | 78 | 35 | 0.690 | |
| 103 | Pennsylvania | Quakers | Philadelphia | PA | 1AA | Ivy League | 69 | 31 | 0.690 | |
| 104 | Cal Lutheran | Kingsmen | Thousand Oaks | CA | D3 | So. California Intercoll. | 64 | 29 | 0.688 | |
| 105 | Alfred | Saxons | Alfred | NY | D3 | Empire Eight | 75 | 34 | 0.688 | |
| 106 | North Dakota | Sioux | Grand Forks | ND | 1AA | Great West | 82 | 38 | 0.683 | moved from D2 to 1AA in 2008 |
| 107 | Springfield | Pride | Springfield | MA | D3 | Empire Eight | 71 | 33 | 0.683 | |
| 108 | Redlands | Bulldogs | Redlands | CA | D3 | So. California Intercoll. | 64 | 30 | 0.681 | |
| 109 | Friends | Falcons | Wichita | KS | NAIA | Kansas Coll. Athl. | 68 | 32 | 0.680 | |
| 110 | Colgate | Red Raiders | Hamilton | NY | 1AA | Patriot League | 80 | 38 | 0.678 | |
| 111 | McKendree | Bearcats | Lebanon | IL | D2 | D-II Independents | 73 | 35 | 0.676 | Moved from NAIA to D2 in 2011 |
| 112 | Wofford | Terriers | Spartanburg | SC | 1AA | Southern | 81 | 39 | 0.675 | |
| 113 | Southern Illinois | Salukis | Carbondale | IL | 1AA | Missouri Valley | 83 | 40 | 0.675 | |
| 114 | Iowa | Hawkeyes | Iowa City | IA | 1A | Big 10 | 85 | 41 | 0.675 | |
| 115 | Capital | Crusaders | Columbus | OH | D3 | Ohio Athletic | 72 | 35 | 0.673 | |
| 115 | Christopher Newport | Captains | Newport News | VA | D3 | USA South | 72 | 35 | 0.673 | |
| 117 | Edinboro | Scots | Edinboro | PA | D2 | Pennsylvania State | 76 | 37 | 0.673 | |
| 118 | McNeese St | Cowboys | Lake Charles | LA | 1AA | Southland | 78 | 38 | 0.672 | |
| 119 | Bridgewater St MA | Bears | Bridgewater | MA | D3 | New England | 65 | 32 | 0.670 | |
| 120 | Adrian | Bulldogs | Adrian | MI | D3 | Michigan Intercollegiate | 67 | 33 | 0.670 | |
| 121 | Thomas More | Saints | Crestview Hills | KY | D3 | The Presidents' Athl. | 71 | 35 | 0.670 | |
| 122 | Dickinson St | Blue Hawks | Dickinson | ND | NAIA | Dakota Athletic | 73 | 36 | 0.670 | |
| 123 | Missouri Western | Griffons | St. Joseph | MO | D2 | Mid-America Intercoll. | 79 | 39 | 0.669 | |
| 124 | North Dakota St | Bison | Fargo | ND | 1AA | Missouri Valley | 77 | 39 | 0.664 | moved from D2 to 1AA in 2004 - FCS Champ 2011 |
| 125 | Texas Tech | Red Raiders | Lubbock | TX | 1A | Big 12 | 84 | 43 | 0.661 | |
| 126 | Lindenwood | Lions | St. Charles | MO | D2 | D-II Independents | 78 | 40 | 0.661 | Moved from NAIA to D2 in 2011 |
| 127 | North Carolina Pembroke | Braves | Pembroke | NC | D2 | D-II Independents | 35 | 18 | 0.660 | new program 2007 |
| 128 | Ripon | Red Hawks | Ripon | WI | D3 | Midwest | 66 | 34 | 0.660 | |
| 129 | Central Arkansas | Bears | Conway | AR | 1AA | Southland | 77 | 40 | 0.658 | moved from D2 to 1AA in 2006 |
| 130 | Hampton | Pirates | Hampton | VA | 1AA | Mid-Eastern Athletic | 75 | 39 | 0.658 | |
| 131 | Tarleton St | Texans | Stephenville | TX | D2 | Lone Star | 73 | 38 | 0.658 | |
| 132 | Ohio Northern | Polar Bears | Ada | OH | D3 | Ohio Athletic | 67 | 35 | 0.657 | |
| 133 | Penn St | Nittany Lions | State College | PA | 1A | Big 10 | 82 | 43 | 0.656 | |
| 133 | Miami FL | Hurricanes | Coral Gables | FL | 1A | Atlantic Coast | 82 | 43 | 0.656 | |
| 133 | Michigan | Wolverines | Ann Arbor | MI | 1A | Big 10 | 82 | 43 | 0.656 | |
| 136 | Bethune-Cookman | Wildcats | Daytona Beach | FL | 1AA | Mid-Eastern Athletic | 74 | 39 | 0.655 | |
| 137 | Bemidji St | Beavers | Bemidji | MN | D2 | Northern Sun Intercoll. | 72 | 38 | 0.655 | |
| 138 | Muhlenberg | Mules | Allentown | PA | D3 | Centennial | 70 | 37 | 0.654 | |
| 139 | Florida St | Seminoles | Tallahassee | FL | 1A | Atlantic Coast | 85 | 45 | 0.654 | |
| 139 | Concordia-Moorhead | Cobbers | Moorhead | MN | D3 | Minnesota Intercoll. | 68 | 36 | 0.654 | |
| 141 | Oklahoma St | Cowboys | Stillwater | OK | 1A | Big 12 | 83 | 44 | 0.654 | |
| 142 | Colorado Mines | Orediggers | Golden | CO | D2 | Rocky Mountain | 75 | 40 | 0.652 | |
| 143 | Jacksonville St | Gamecocks | Jacksonville | AL | 1AA | Ohio Valley | 73 | 39 | 0.652 | |
| 144 | James Madison | Dukes | Harrisonburg | VA | 1AA | Colonial Athletic | 80 | 43 | 0.650 | FCS Champion 2004 |
| 145 | St Olaf | Oles | Northfield | MN | D3 | Minnesota Intercoll. | 65 | 35 | 0.650 | |
| 145 | Centre | Praying Colonels | Danville | KY | D3 | Southern Coll. Athl. | 65 | 35 | 0.650 | |
| 147 | C.W. Post | Pioneers | Brookville | NY | D2 | Pennsylvania State | 72 | 39 | 0.649 | |
| 148 | Boston College | Eagles | Chestnut Hill | MA | 1A | Atlantic Coast | 83 | 45 | 0.648 | |
| 149 | St Thomas | Tommies | St. Paul | MN | D3 | Minnesota Intercoll. | 70 | 38 | 0.648 | |
| 150 | New Hampshire | Wildcats | Durham | NH | 1AA | Colonial Athletic | 81 | 44 | 0.648 | |
| 151 | Wooster | Scots | Wooster | OH | D3 | North Coast Athletic | 66 | 36 | 0.647 | |
| 152 | Drake | Bulldogs | Des Moines | IA | 1AA | Pioneer | 71 | 39 | 0.645 | |
| 153 | Brigham Young | Cougars | Provo | UT | 1A | I-A Independents | 80 | 44 | 0.645 | |
| 154 | Franklin | Grizzlies | Franklin | IN | D3 | Heartland Coll. Athletic | 69 | 38 | 0.645 | |
| 155 | Texas A&M-Kingsville | Javelinas | Kingsville | TX | D2 | Lone Star | 74 | 41 | 0.643 | |
| 156 | Massachusetts | Minutemen | Amherst | MA | 1AA | Colonial Athletic | 77 | 43 | 0.642 | |
| 157 | Duquesne | Dukes | Pittsburgh | PA | 1AA | Northeast | 68 | 38 | 0.642 | |
| 158 | Lehigh | Mountain Hawks | Bethlehem | PA | 1AA | Patriot League | 74 | 42 | 0.638 | |
| 159 | Delaware | Blue Hens | Newark | DE | 1AA | Colonial Athletic | 81 | 46 | 0.638 | FCS Champion 2003 |
| 160 | St Cloud St | Huskies | St Cloud | MN | D2 | Northern Sun Intercoll. | 72 | 41 | 0.637 | |
| 161 | Augustana IL | Vikings | Rock Island | IL | D3 | Conf.of Ill. and Wisc. | 64 | 37 | 0.634 | |
| 162 | Whitworth | Pirates | Spokane | WA | D3 | Northwest | 62 | 36 | 0.633 | |
| 163 | Georgia Southern | Eagles | Statesboro | GA | 1AA | Southern | 77 | 45 | 0.631 | |
| 164 | Missouri | Tigers | Columbia | MO | 1A | Big 12 | 80 | 47 | 0.630 | |
| 165 | Shaw | Bears | Raleigh | NC | D2 | Central Intercollegiate | 61 | 36 | 0.629 | new program 2003 |
| 166 | Nebraska | Cornhuskers | Lincoln | NE | 1A | Big 10 | 81 | 48 | 0.628 | |
| 167 | Baldwin-Wallace | Yellow Jackets | Berea | OH | D3 | Ohio Athletic | 64 | 38 | 0.627 | |
| 168 | Hawaii | Warriors | Manoa | HI | 1A | Western Athletic | 84 | 50 | 0.627 | |
| 169 | West Chester | Golden Rams | West Chester | PA | D2 | Pennsylvania State | 75 | 45 | 0.625 | |
| 169 | East Stroudsburg | Warriors | East Stroudsburg | PA | D2 | Pennsylvania State | 70 | 42 | 0.625 | |
| 171 | UW-Stevens Point | Pointers | Stevens Point | WI | D3 | Wisconsin Intercoll. | 63 | 38 | 0.624 | |
| 172 | Arkansas | Razorbacks | Fayetteville | AR | 1A | Southeastern | 79 | 48 | 0.622 | |
| 173 | Walsh | Cavaliers | North Canton | OH | D2 | D-II Independents | 69 | 42 | 0.622 | Moved from NAIA to D2 in 2011 |
| 174 | Concordia WI | Falcons | Mequon | WI | D3 | Northern Athletic | 64 | 39 | 0.621 | |
| 174 | Northwestern MN | Eagles | St. Paul | MN | D3 | Upper Midwest Athl. | 64 | 39 | 0.621 | moved from NAIA to D3 in 2005 |
| 176 | Louisville | Cardinals | Louisville | KY | 1A | Big East | 77 | 47 | 0.621 | |
| 177 | Washburn | Ichabods | Topeka | KS | D2 | Mid-America Intercoll. | 72 | 44 | 0.621 | |
| 177 | Marian | Knights | Indianapolis | IN | NAIA | Mid-States | 36 | 22 | 0.621 | new program 2007 |
| 179 | California | Golden Bears | Berkeley | CA | 1A | Pacific 12 | 78 | 48 | 0.619 | |
| 180 | Furman | Paladins | Greenville | SC | 1AA | Southern | 73 | 45 | 0.619 | |
| 181 | Villanova | Wildcats | Villanova | PA | 1AA | Colonial Athletic | 76 | 47 | 0.618 | FCS Champion 2009 |
| 182 | Coastal Carolina | Chanticleers | Conway | SC | 1AA | Big South | 63 | 39 | 0.618 | new program 2003 |
| 183 | Montana St | Bobcats | Bozeman | MT | 1AA | Big Sky | 74 | 46 | 0.617 | |
| 184 | Alabama A&M | Bulldogs | Normal | AL | 1AA | Southwestern Athletic | 72 | 45 | 0.615 | |
| 184 | Widener | Pioneers | Chester | PA | D3 | Middle Atlantic | 64 | 40 | 0.615 | |
| 186 | Wingate | Bulldogs | Wingate | NC | D2 | South Atlantic | 67 | 42 | 0.615 | |
| 187 | Cincinnati | Bearcats | Cincinnati | OH | 1A | Big East | 78 | 49 | 0.614 | |
| 187 | Northern Illinois | Huskies | De Kalb | IL | 1A | Mid-American | 78 | 49 | 0.614 | |
| 189 | Southern Mississippi | Golden Eagles | Hattiesburg | MS | 1A | Conference USA | 79 | 50 | 0.612 | |
| 190 | Catawba | Indians | Salisbury | NC | D2 | South Atlantic | 66 | 42 | 0.611 | |
| 190 | Mary | Marauders | Bismarck | ND | D2 | Northern Sun Intercoll. | 66 | 42 | 0.611 | moved from NAIA to D2 in 2006 |
| 192 | West Texas A&M | Buffaloes | Canyon | TX | D2 | Lone Star | 72 | 46 | 0.610 | |
| 193 | Clemson | Tigers | Clemson | SC | 1A | Atlantic Coast | 78 | 50 | 0.609 | |
| 194 | Eastern Washington | Eagles | Cheney | WA | 1AA | Big Sky | 73 | 47 | 0.608 | FCS Champion 2010 |
| 195 | Benedictine KS | Ravens | Atchison | KS | NAIA | Heart of America | 68 | 44 | 0.607 | |
| 196 | Albany NY | Great Danes | Albany | NY | 1AA | Northeast | 69 | 45 | 0.605 | |
| 197 | Georgia Tech | Yellow Jackets | Atlanta | GA | 1A | Atlantic Coast | 78 | 51 | 0.605 | |
| 198 | Willamette | Bearcats | Salem | OR | D3 | Northwest | 61 | 40 | 0.604 | |
| 199 | Wilkes | Colonels | Wilkes Barre | PA | D3 | Middle Atlantic | 64 | 42 | 0.604 | |
| 199 | Ottawa | Braves | Ottawa | KS | NAIA | Kansas Coll. Athl. | 64 | 42 | 0.604 | |
| 201 | South Florida | Bulls | Tampa | FL | 1A | Big East | 73 | 48 | 0.603 | |
| 202 | Navy | Midshipmen | Annapolis | MD | 1A | I-A Independents | 76 | 50 | 0.603 | |
| 203 | Yale | Bulldogs | New Haven | CT | 1AA | Ivy League | 60 | 40 | 0.600 | |
| 203 | Union NY | Dutchmen | Schenectady | NY | D3 | Liberty League | 60 | 40 | 0.600 | |
| 203 | Huntingdon | Hawks | Montgomery | AL | D3 | D-III Independents | 51 | 34 | 0.600 | new program 2003 |
| 206 | Cal Poly-SLO | Mustangs | San Luis Obispo | CA | 1AA | Great West | 67 | 45 | 0.598 | |
| 207 | Fayetteville St | Broncos | Fayetteville | NC | D2 | Central Intercollegiate | 64 | 43 | 0.598 | |
| 208 | American International | Yellow Jackets | Springfield | MA | D2 | Northeast-10 | 59 | 40 | 0.596 | |
| 209 | Hastings | Broncos | Hastings | NE | NAIA | Great Plains Athl. | 63 | 43 | 0.594 | |
| 210 | Carthage | Redmen | Kenosha | WI | D3 | Conf.of Ill. and Wisc. | 61 | 42 | 0.592 | |
| 211 | Pittsburgh | Panthers | Pittsburgh | PA | 1A | Big East | 74 | 51 | 0.592 | |
| 212 | Eastern Kentucky | Colonels | Richmond | KY | 1AA | Ohio Valley | 68 | 47 | 0.591 | |
| 213 | Central Conn St | Blue Devils | New Britain | CT | 1AA | Northeast | 65 | 45 | 0.591 | |
| 214 | Tennessee | Volunteers | Knoxville | TN | 1A | Southeastern | 75 | 52 | 0.591 | |
| 214 | Houston | Cougars | Houston | TX | 1A | Conference USA | 75 | 52 | 0.591 | |
| 216 | Washington MO | Bears | St. Louis | MO | D3 | University Athletic | 59 | 41 | 0.590 | |
| 217 | Waynesburg | Yellow Jackets | Waynesburg | PA | D3 | The Presidents' Athl. | 60 | 42 | 0.588 | |
| 218 | John Carroll | Blue Streaks | University Heights | OH | D3 | Ohio Athletic | 61 | 43 | 0.587 | |
| 219 | Merrimack | Warriors | North Andover | MA | D2 | Northeast-10 | 59 | 42 | 0.584 | |
| 220 | Fort Valley St | Wildcats | Fort Valley | GA | D2 | Southern Intercoll. | 63 | 45 | 0.583 | |
| 221 | Michigan Tech | Huskies | Houghton | MI | D2 | Great Lakes Intercoll. | 60 | 43 | 0.583 | |
| 222 | Endicott | Power Gulls | Beverly | MA | D3 | New England | 53 | 38 | 0.582 | new program 2003 |
| 223 | Fresno St | Bulldogs | Fresno | CA | 1A | Western Athletic | 75 | 54 | 0.581 | |
| 224 | Bryant | Bulldogs | Smithfield | RI | 1AA | Northeast | 61 | 44 | 0.581 | moved from D2 to 1AA in 2008 |
| 225 | Notre Dame | Fighting Irish | Notre Dame | IN | 1A | I-A Independents | 72 | 52 | 0.581 | |
| 226 | Azusa Pacific | Cougars | Azusa | CA | NAIA | NAIA Independents | 62 | 45 | 0.579 | |
| 227 | Nevada | Wolf Pack | Reno | NV | 1A | Western Athletic | 73 | 53 | 0.579 | |
| 228 | Westminster MO | Blue Jays | Fulton | MO | D3 | Upper Midwest Athl. | 55 | 40 | 0.579 | |
| 228 | Martin Luther | Knights | New Ulm | MN | D3 | Upper Midwest Athl. | 55 | 40 | 0.579 | moved from NAIA to D3 in 2003 |
| 230 | UW-Eau Claire | Blugolds | Eau Claire | WI | D3 | Wisconsin Intercoll. | 59 | 43 | 0.578 | |
| 230 | Lakeland | Muskies | Sheboygan | WI | D3 | Northern Athletic | 59 | 43 | 0.578 | |
| 230 | Kansas Wesleyan | Coyotes | Salina | KS | NAIA | Kansas Coll. Athl. | 59 | 43 | 0.578 | |
| 233 | South Dakota St | Jackrabbits | Brookings | SD | 1AA | Missouri Valley | 64 | 47 | 0.577 | moved from D2 to 1AA in 2004 |
| 234 | Geneva | Golden Tornadoes | Beaver Falls | PA | D3 | The Presidents' Athl. | 61 | 45 | 0.575 | moved from NAIA to D3 in 2007 |
| 235 | Middlebury | Panthers | Middlebury | VT | D3-d | New England Small | 46 | 34 | 0.575 | Disconnected |
| 236 | Nebraska Wesleyan | Prairie Wolves | Lincoln | NE | NAIA | Great Plains Athl. | 58 | 43 | 0.574 | |
| 237 | Illinois Wesleyan | Titans | Bloomington | IL | D3 | Conf.of Ill. and Wisc. | 59 | 44 | 0.573 | |
| 237 | Carnegie Mellon | Tartans | Pittsburgh | PA | D3 | University Athletic | 59 | 44 | 0.573 | |
| 239 | South Carolina | Gamecocks | Columbia | SC | 1A | Southeastern | 71 | 53 | 0.573 | |
| 240 | Oregon St | Beavers | Corvallis | OR | 1A | Pacific 12 | 72 | 54 | 0.571 | |
| 240 | Southern Nazarene | Crimson Storm | Bethany | OK | NAIA | Central States | 60 | 45 | 0.571 | |
| 240 | Lindsey Wilson | Blue Raiders | Columbia | KY | NAIA | Mid-South | 12 | 9 | 0.571 | new program 2010 |
| 243 | Tulsa | Golden Hurricane | Tulsa | OK | 1A | Conference USA | 73 | 55 | 0.570 | |
| 244 | Albright | Lions | Reading | PA | D3 | Middle Atlantic | 61 | 46 | 0.570 | |
| 245 | Connecticut | Huskies | Storrs | CT | 1A | Big East | 70 | 53 | 0.569 | |
| 246 | Minot St | Beavers | Minot | ND | D2 | D-II Independents | 58 | 44 | 0.569 | Moved from NAIA to D2 in 2011 |
| 247 | Kansas St | Wildcats | Manhattan | KS | 1A | Big 12 | 71 | 54 | 0.568 | |
| 248 | North Carolina Wesleyan | Battling Bishops | Rocky Mount | NC | D3 | USA South | 46 | 35 | 0.568 | new program 2004 |
| 249 | Pacific Lutheran | Lutes | Tacoma | WA | D3 | Northwest | 51 | 39 | 0.567 | |
| 250 | Florida A&M | Rattlers | Tallahassee | FL | 1AA | Mid-Eastern Athletic | 64 | 49 | 0.566 | |
| 251 | Washington & Lee | Generals | Lexington | VA | D3 | Old Dominion Athl. | 57 | 44 | 0.564 | |
| 252 | St Scholastica | Saints | Duluth | MN | D3 | Upper Midwest Athl. | 22 | 17 | 0.564 | new program 2008 |
| 253 | Louisiana College | Wildcats | Pineville | LA | D3 | American Southwest | 55 | 43 | 0.561 | |
| 254 | William & Mary | Tribe | Williamsburg | VA | 1AA | Colonial Athletic | 65 | 51 | 0.560 | |
| 255 | Brown | Bears | Providence | RI | 1AA | Ivy League | 56 | 44 | 0.560 | |
| 255 | Lycoming | Warriors | Williamsport | PA | D3 | Middle Atlantic | 56 | 44 | 0.560 | |
| 257 | Northwood | Timberwolves | Midland | MI | D2 | Great Lakes Intercoll. | 61 | 48 | 0.560 | |
| 257 | Monmouth NJ | Hawks | West Long Branch | NJ | 1AA | Northeast | 61 | 48 | 0.560 | |
| 257 | Slippery Rock | Rockets | Slippery Rock | PA | D2 | Pennsylvania State | 61 | 48 | 0.560 | |
| 260 | Dickinson | Red Devils | Carlisle | PA | D3 | Centennial | 57 | 45 | 0.559 | |
| 261 | South Dakota | Coyotes | Vermillion | SD | 1AA | Great West | 62 | 49 | 0.559 | moved from D2 to 1AA in 2008 |
| 262 | Grand View | Vikings | Des Moines | IA | NAIA | Mid-States | 24 | 19 | 0.558 | new program 2008 |
| 263 | Southeastern Okla St | Savages | Durant | OK | D2 | Great American | 58 | 46 | 0.558 | |
| 264 | Hillsdale | Chargers | Hillsdale | MI | D2 | Great Lakes Intercoll. | 63 | 50 | 0.558 | |
| 264 | Concordia-St Paul | Golden Bears | St. Paul | MN | D2 | Northern Sun Intercoll. | 63 | 50 | 0.558 | |
| 266 | Richmond | Spiders | Richmond | VA | 1AA | Colonial Athletic | 68 | 54 | 0.557 | FCS Champion 2008 |
| 267 | Mars Hill | Lions | Mars Hill | NC | D2 | South Atlantic | 59 | 47 | 0.557 | |
| 268 | Air Force | Falcons | Colorado Springs | CO | 1A | Mountain West | 69 | 55 | 0.556 | |
| 268 | Toledo | Rockets | Toledo | OH | 1A | Mid-American | 69 | 55 | 0.556 | |
| 270 | Michigan St | Spartans | East Lansing | MI | 1A | Big 10 | 70 | 56 | 0.556 | |
| 270 | UW-Stout | Blue Devils | Menomonie | WI | D3 | Wisconsin Intercoll. | 55 | 44 | 0.556 | |
| 272 | Allegheny | Gators | Meadville | PA | D3 | North Coast Athletic | 56 | 45 | 0.554 | |
| 273 | Liberty | Flames | Lynchburg | VA | 1AA | Big South | 62 | 50 | 0.554 | |
| 274 | UW-La Crosse | Eagles | La Crosse | WI | D3 | Wisconsin Intercoll. | 57 | 46 | 0.553 | |
| 275 | Ferrum | Panthers | Ferrum | VA | D3 | USA South | 54 | 44 | 0.551 | |
| 276 | Stony Brook | Seawolves | Stony Brook | NY | 1AA | Big South | 60 | 49 | 0.550 | |
| 277 | New Jersey | Lions | Ewing | NJ | D3 | New Jersey Athl. | 55 | 45 | 0.550 | |
| 278 | New Haven | Chargers | West Haven | CT | D2 | Northeast-10 | 29 | 24 | 0.547 | re-started in 2009 |
| 279 | Westfield St | Owls | Westfield | MA | D3 | New England | 53 | 44 | 0.546 | |
| 280 | Bowling Green | Falcons | Bowling Green | OH | 1A | Mid-American | 67 | 56 | 0.545 | |
| 281 | Southern U. | Jaguars | Baton Rouge | LA | 1AA | Southwestern Athletic | 61 | 51 | 0.545 | |
| 281 | Shippensburg | Red Raiders | Shippensburg | PA | D2 | Pennsylvania State | 61 | 51 | 0.545 | |
| 283 | Valley City St | Vikings | Valley City | ND | NAIA | Dakota Athletic | 55 | 46 | 0.545 | |
| 284 | Lafayette | Leopards | Easton | PA | 1AA | Patriot League | 62 | 52 | 0.544 | |
| 284 | SUNY-Maritime | Privateers | Throgs Neck | NY | D3 | East Coast | 31 | 26 | 0.544 | new program 2006 |
| 286 | Mass-Dartmouth | Corsairs | North Dartmouth | MA | D3 | New England | 56 | 47 | 0.544 | |
| 287 | Langston | Lions | Langston | OK | NAIA | Central States | 57 | 48 | 0.543 | NAIA to D2 '06 back NAIA in '08 |
| 288 | Arkansas Tech | Wonder Boys | Russellville | AR | D2 | Great American | 58 | 49 | 0.542 | |
| 289 | Charleston WV | Golden Eagles | Charleston | WV | D2 | West Virginia Intercoll. | 53 | 45 | 0.541 | new program 2003 |
| 290 | Bethel TN | Wildcats | McKenzie | TN | NAIA | Mid-South | 60 | 51 | 0.541 | |
| 291 | Elmhurst | Bluejays | Elmhurst | IL | D3 | Conf.of Ill. and Wisc. | 54 | 46 | 0.540 | |
| 291 | Millsaps | Majors | Jackson | MS | D3 | Southern Coll. Athl. | 54 | 46 | 0.540 | |
| 291 | Rose-Hulman | Engineers | Terre Haute | IN | D3 | Heartland Coll. Athletic | 54 | 46 | 0.540 | |
| 294 | Shorter | Hawks | Rome | GA | NAIA | Mid-South | 41 | 35 | 0.539 | new program 2005 |
| 295 | Alma | Scots | Alma | MI | D3 | Michigan Intercollegiate | 55 | 47 | 0.539 | |
| 296 | Sam Houston St | Bearkats | Huntsville | TX | 1AA | Southland | 62 | 53 | 0.539 | |
| 296 | Alabama St | Hornets | Montgomery | AL | 1AA | Southwestern Athletic | 62 | 53 | 0.539 | |
| 298 | Maine | Black Bears | Orono | ME | 1AA | Colonial Athletic | 63 | 54 | 0.538 | |
| 299 | Rutgers | Scarlet Knights | New Brunswick | NJ | 1A | Big East | 66 | 57 | 0.537 | |
| 300 | UC-Davis | Aggies | Davis | CA | 1AA | Great West | 59 | 51 | 0.536 | moved from D2 to 1AA in 2004 |
| 300 | Ashland | Eagles | Ashland | OH | D2 | Great Lakes Intercoll. | 59 | 51 | 0.536 | |
| 300 | Glenville St | Pioneers | Glenville | WV | D2 | West Virginia Intercoll. | 59 | 51 | 0.536 | |
| 303 | Maryland | Terrapins | College Park | MD | 1A | Atlantic Coast | 67 | 58 | 0.536 | |
| 304 | Ohio Dominican | Panthers | Columbus | OH | D2 | Great Lakes Intercoll. | 45 | 39 | 0.536 | moved from NAIA to D2 in 2010 |
| 305 | Augustana SD | Vikings | Sioux Falls | SD | D2 | Northern Sun Intercoll. | 61 | 53 | 0.535 | |
| 306 | Black Hills St | Yellow Jackets | Spearfish | SD | D2 | D-II Independents | 54 | 47 | 0.535 | Moved from NAIA to D2 in 2011 |
| 307 | Bowie St | Bulldogs | Bowie | MD | D2 | Central Intercollegiate | 55 | 48 | 0.534 | |
| 307 | McPherson | Bulldogs | McPherson | KS | NAIA | Kansas Coll. Athl. | 55 | 48 | 0.534 | |
| 309 | Arizona St | Sun Devils | Tempe | AZ | 1A | Pacific 12 | 66 | 58 | 0.532 | |
| 309 | North Carolina St | Wolfpack | Raleigh | NC | 1A | Atlantic Coast | 66 | 58 | 0.532 | |
| 311 | Tusculum | Pioneers | Greeneville | TN | D2 | South Atlantic | 58 | 51 | 0.532 | |
| 311 | West Liberty St | Hilltoppers | West Liberty | WV | D2 | West Virginia Intercoll. | 58 | 51 | 0.532 | |
| 313 | Youngstown St | Penguins | Youngstown | OH | 1AA | Missouri Valley | 61 | 54 | 0.530 | |
| 314 | Virginia St | Trojans | Petersburg | VA | D2 | Central Intercollegiate | 53 | 47 | 0.530 | |
| 315 | Jamestown | Jimmies | Jamestown | ND | NAIA | Dakota Athletic | 54 | 48 | 0.529 | |
| 316 | Morehouse | Maroon Tigers | Atlanta | GA | D2 | Southern Intercoll. | 55 | 49 | 0.529 | |
| 317 | Troy | Trojans | Troy | AL | 1A | Sun Belt | 65 | 58 | 0.528 | |
| 318 | William Penn | Statesmen | Oskaloosa | IA | NAIA | Mid-States | 58 | 52 | 0.527 | |
| 319 | Maine Maritime | Mariners | Castine | ME | D3 | New England | 51 | 46 | 0.526 | |
| 320 | Aurora | Spartans | Aurora | IL | D3 | Northern Athletic | 53 | 48 | 0.525 | |
| 321 | Virginia | Cavaliers | Charlottesville | VA | 1A | Atlantic Coast | 65 | 59 | 0.524 | |
| 322 | Western Oregon | Runnin' Wolves | Monmouth | OR | D2 | Great Northwest Athl. | 55 | 50 | 0.524 | |
| 322 | Brockport St | Golden Eagles | Brockport | NY | D3 | New Jersey Athl. | 55 | 50 | 0.524 | |
| 324 | Trine | Thunder | Angola | IN | D3 | Michigan Intercollegiate | 54 | 50 | 0.519 | moved from NAIA to D3 in 2003 |
| 325 | Jacksonville FL | Dolphins | Jacksonville | FL | 1AA | Pioneer | 55 | 51 | 0.519 | |
| 326 | Winston-Salem St | Rams | Winston Salem | NC | D2 | Central Intercollegiate | 56 | 52 | 0.519 | moved back to D2 from 1AA in 2010 |
| 326 | North Carolina Central | Eagles | Durham | NC | 1AA | Mid-Eastern Athletic | 56 | 52 | 0.519 | moved from D2 to 1AA in 2007 |
| 328 | Gardner-Webb | Runnin' Bulldogs | Boiling Springs | NC | 1AA | Big South | 57 | 53 | 0.518 | |
| 329 | Texas A&M | Aggies | College Station | TX | 1A | Big 12 | 64 | 60 | 0.516 | |
| 330 | UW-Oshkosh | Titans | Oshkosh | WI | D3 | Wisconsin Intercoll. | 51 | 48 | 0.515 | |
| 331 | Randolph-Macon | Yellow Jackets | Ashland | VA | D3 | Old Dominion Athl. | 52 | 49 | 0.515 | |
| 332 | Newberry | Indians | Newberry | SC | D2 | South Atlantic | 54 | 51 | 0.514 | |
| 332 | Stillman | Tigers | Tuscaloosa | AL | D2 | Southern Intercoll. | 54 | 51 | 0.514 | moved from D3 to D2 in 2003 |
| 332 | Kean | Cougars | Union | NJ | D3 | New Jersey Athl. | 54 | 51 | 0.514 | |
| 335 | Illinois St | Red Birds | Normal | IL | 1AA | Missouri Valley | 58 | 55 | 0.513 | |
| 336 | Purdue | Boilermakers | West Lafayette | IN | 1A | Big 10 | 64 | 61 | 0.512 | |
| 337 | Claremont-Mudd-Scripps | Stags | Claremont | CA | D3 | So. California Intercoll. | 46 | 44 | 0.511 | |
| 338 | Hope | Flying Dutchmen | Holland | MI | D3 | Michigan Intercollegiate | 52 | 50 | 0.510 | |
| 339 | Indianapolis | Greyhounds | Indianapolis | IN | D2 | Great Lakes Intercoll. | 56 | 54 | 0.509 | |
| 340 | Otterbein | Cardinals | Westerville | OH | D3 | Ohio Athletic | 51 | 50 | 0.505 | |
| 340 | Hanover | Panthers | Hanover | IN | D3 | Heartland Coll. Athletic | 51 | 50 | 0.505 | |
| 342 | Virginia Union | Panthers | Richmond | VA | D2 | Central Intercollegiate | 52 | 51 | 0.505 | |
| 342 | Worcester St | Lancers | Worcester | MA | D3 | New England | 52 | 51 | 0.505 | |
| 344 | Harding | Bison | Searcy | AR | D2 | Great American | 53 | 52 | 0.505 | |
| 344 | Moravian | Greyhounds | Bethlehem | PA | D3 | Centennial | 53 | 52 | 0.505 | |
| 346 | Morehead St | Eagles | Morehead | KY | 1AA | Pioneer | 57 | 56 | 0.504 | |
| 347 | UCLA | Bruins | Los Angeles | CA | 1A | Pacific 12 | 63 | 63 | 0.500 | |
| 347 | Wake Forest | Demon Deacons | Winston Salem | NC | 1A | Atlantic Coast | 62 | 62 | 0.500 | |
| 347 | Northwestern | Wildcats | Evanston | IL | 1A | Big 10 | 62 | 62 | 0.500 | |
| 347 | Stephen F. Austin | Lumberjacks | Nacogdoches | TX | 1AA | Southland | 57 | 57 | 0.500 | |
| 347 | Eastern Illinois | Panthers | Charleston | IL | 1AA | Ohio Valley | 59 | 59 | 0.500 | |
| 347 | Jackson St | Tigers | Jackson | MS | 1AA | Southwestern Athletic | 56 | 56 | 0.500 | |
| 347 | Baker | Wildcats | Baldwin City | KS | NAIA | Heart of America | 53 | 53 | 0.500 | |
| 347 | Albion | Britons | Albion | MI | D3 | Michigan Intercollegiate | 51 | 51 | 0.500 | |
| 347 | Sterling | Warriors | Sterling | KS | NAIA | Kansas Coll. Athl. | 50 | 50 | 0.500 | |
| 347 | Robert Morris (IL) | Eagles | Chicago | IL | NAIA | NAIA Independents | 4 | 4 | 0.500 | new program 2011 |
| 347 | Colby | White Mules | Waterville | ME | D3-d | New England Small | 40 | 40 | 0.500 | Disconnected |
| 358 | Texas St- San Marcos | Bobcats | San Marcos | TX | 1AA | I-AA Independents | 58 | 59 | 0.496 | |
| 359 | Holy Cross | Crusaders | Worcester | MA | 1AA | Patriot League | 56 | 57 | 0.496 | |
| 360 | Marshall | Thundering Herd | Huntington | WV | 1A | Conference USA | 60 | 62 | 0.492 | |
| 360 | Western Kentucky | Hilltoppers | Bowling Green | KY | 1A | Sun Belt | 60 | 62 | 0.492 | moved from 1AA to 1A in 2007- FCS Champ 2002 |
| 362 | Western Illinois | Leathernecks | Macomb | IL | 1AA | Missouri Valley | 57 | 59 | 0.491 | |
| 363 | Northern Arizona | Lumberjacks | Flagstaff | AZ | 1AA | Big Sky | 55 | 57 | 0.491 | |
| 363 | Wayne St NE | Wildcats | Wayne | NE | D2 | Northern Sun Intercoll. | 55 | 57 | 0.491 | |
| 365 | Kutztown | Golden Bears | Kutztown | PA | D2 | Pennsylvania State | 54 | 56 | 0.491 | |
| 365 | Wagner | Seahawks | Staten Island | NY | 1AA | Northeast | 54 | 56 | 0.491 | |
| 367 | Tabor | Bluejays | Hillsboro | KS | NAIA | Kansas Coll. Athl. | 51 | 53 | 0.490 | |
| 368 | East Texas Baptist | Tigers | Marshall | TX | D3 | American Southwest | 50 | 52 | 0.490 | |
| 369 | Central Michigan | Chippewas | Mount Pleasant | MI | 1A | Mid-American | 61 | 64 | 0.488 | |
| 370 | MSU-Mankato | Mavericks | Mankato | MN | D2 | Northern Sun Intercoll. | 55 | 58 | 0.487 | |
| 370 | Montana Tech | Orediggers | Butte | MT | NAIA | Frontier | 55 | 58 | 0.487 | |
| 372 | Evangel | Crusaders | Springfield | MO | NAIA | Heart of America | 51 | 54 | 0.486 | |
| 373 | Simpson | Storm | Indianola | IA | D3 | Iowa Intercollegiate | 49 | 52 | 0.485 | |
| 373 | Illinois College | Blue Boys | Jacksonville | IL | D3 | Midwest | 49 | 52 | 0.485 | |
| 373 | Greenville | Panthers | Greenville | IL | D3 | Upper Midwest Athl. | 49 | 52 | 0.485 | |
| 376 | UCF | Knights | Orlando | FL | 1A | Conference USA | 60 | 64 | 0.484 | |
| 377 | Elizabeth City St | Vikings | Elizabeth City | NC | D2 | Central Intercollegiate | 51 | 55 | 0.481 | |
| 377 | Midland Lutheran | Warriors | Fremont | NE | NAIA | Great Plains Athl. | 51 | 55 | 0.481 | |
| 379 | Franklin & Marshall | Diplomats | Lancaster | PA | D3 | Centennial | 50 | 54 | 0.481 | |
| 380 | Miami OH | RedHawks | Oxford | OH | 1A | Mid-American | 60 | 65 | 0.480 | |
| 380 | Ohio U. | Bobcats | Athens | OH | 1A | Mid-American | 60 | 65 | 0.480 | |
| 380 | Carroll WI | Pioneers | Waukesha | WI | D3 | Midwest | 48 | 52 | 0.480 | |
| 383 | Averett | Cougars | Danville | VA | D3 | USA South | 47 | 51 | 0.480 | |
| 383 | Western New England | Golden Bears | Springfield | MA | D3 | New England | 47 | 51 | 0.480 | |
| 385 | Weber St | Wildcats | Ogden | UT | 1AA | Big Sky | 55 | 60 | 0.478 | |
| 386 | Wayne St MI | Warriors | Detroit | MI | D2 | Great Lakes Intercoll. | 54 | 59 | 0.478 | |
| 387 | Ferris St | Bulldogs | Big Rapids | MI | D2 | Great Lakes Intercoll. | 52 | 57 | 0.477 | |
| 387 | Kentucky St | Thorobreds | Frankfort | KY | D2 | Southern Intercoll. | 52 | 57 | 0.477 | |
| 389 | Lake Forest | Forresters | Lake Forest | IL | D3 | Midwest | 48 | 53 | 0.475 | |
| 390 | WV Wesleyan | Bobcats | Buckhannon | WV | D2 | West Virginia Intercoll. | 51 | 57 | 0.472 | |
| 391 | Henderson St | Reddies | Arkadelphia | AR | D2 | Great American | 49 | 55 | 0.471 | |
| 392 | Western Michigan | Broncos | Kalamazoo | MI | 1A | Mid-American | 57 | 64 | 0.471 | |
| 393 | Stanford | Cardinal | Stanford | CA | 1A | Pacific 12 | 56 | 63 | 0.471 | |
| 393 | Ursinus | Bears | Collegeville | PA | D3 | Centennial | 48 | 54 | 0.471 | |
| 395 | Luther | Norse | Decorah | IA | D3 | Iowa Intercollegiate | 47 | 53 | 0.470 | |
| 395 | Emory & Henry | Wasps | Emory | VA | D3 | Old Dominion Athl. | 47 | 53 | 0.470 | |
| 397 | Mesa St | Mavericks | Grand Junction | CO | D2 | Rocky Mountain | 52 | 59 | 0.468 | |
| 398 | Virginia-Wise | Highland Cavaliers | Wise | VA | NAIA | Mid-South | 51 | 58 | 0.468 | |
| 399 | Minnesota | Golden Gophers | Minneapolis | MN | 1A | Big 10 | 58 | 66 | 0.468 | |
| 400 | Chicago | Maroons | Chicago | IL | D3 | University Athletic | 43 | 49 | 0.467 | |
| 401 | Prairie View A&M | Panthers | Prairie View | TX | 1AA | Southwestern Athletic | 50 | 57 | 0.467 | |
| 401 | North Greenville | Crusaders | Tigerville | SC | D2 | D-II Independents | 50 | 57 | 0.467 | |
| 403 | Eastern Oregon | Mountaineers | La Grande | OR | NAIA | Frontier | 49 | 56 | 0.467 | moved from D3 to NAIA in 2004 |
| 403 | Norwich | Cadets | Northfield | VT | D3 | East Coast | 49 | 56 | 0.467 | |
| 405 | Northwestern St | Demons | Natchitoches | LA | 1AA | Southland | 53 | 61 | 0.465 | |
| 405 | Fordham | Rams | Bronx | NY | 1AA | Patriot League | 53 | 61 | 0.465 | |
| 407 | Ouachita Baptist | Tigers | Arkadelphia | AR | D2 | Great American | 46 | 53 | 0.465 | |
| 408 | Adams St | Grizzlies | Alamosa | CO | D2 | Rocky Mountain | 51 | 59 | 0.464 | |
| 409 | Kentucky | Wildcats | Lexington | KY | 1A | Southeastern | 57 | 66 | 0.463 | |
| 410 | Humboldt St | Lumberjacks | Arcata | CA | D2 | Great Northwest Athl. | 49 | 57 | 0.462 | |
| 411 | Elon | Phoenix | Burlington | NC | 1AA | Southern | 52 | 61 | 0.460 | |
| 412 | Millikin | Big Blue | Decatur | IL | D3 | Conf.of Ill. and Wisc. | 46 | 54 | 0.460 | |
| 413 | Presbyterian | Blue Hose | Clinton | SC | 1AA | Big South | 51 | 60 | 0.459 | moved from D2 to 1AA in 2007 |
| 414 | Hartwick | Hawks | Oneonta | NY | D3 | Empire Eight | 45 | 53 | 0.459 | |
| 415 | Arkansas St | Red Wolves | Jonesboro | AR | 1A | Sun Belt | 55 | 65 | 0.458 | |
| 416 | St Joseph's | Pumas | Rensselaer | IN | D2 | Great Lakes Football | 49 | 58 | 0.458 | |
| 417 | Lebanon Valley | Flying Dutchmen | Annville | PA | D3 | Middle Atlantic | 47 | 56 | 0.456 | |
| 418 | Plymouth St | Panthers | Plymouth | NH | D3 | New England | 46 | 55 | 0.455 | |
| 419 | Morgan St | Golden Bears | Baltimore | MD | 1AA | Mid-Eastern Athletic | 51 | 61 | 0.455 | |
| 420 | Central Oklahoma | Bronchos | Edmond | OK | D2 | D-II Independents | 49 | 59 | 0.454 | |
| 420 | Campbellsville | Tigers | Campbellsville | KY | NAIA | Mid-South | 49 | 59 | 0.454 | |
| 422 | Robert Morris (PA) | Colonials | Moon Township | PA | 1AA | Northeast | 48 | 58 | 0.453 | |
| 423 | Mississippi | Rebels | Oxford | MS | 1A | Southeastern | 55 | 67 | 0.451 | |
| 423 | Louisiana Tech | Bulldogs | Ruston | LA | 1A | Western Athletic | 55 | 67 | 0.451 | |
| 425 | Norfolk St | Spartans | Norfolk | VA | 1AA | Mid-Eastern Athletic | 50 | 61 | 0.450 | |
| 426 | Buena Vista | Beavers | Storm Lake | IA | D3 | Iowa Intercollegiate | 45 | 55 | 0.450 | |
| 427 | East Carolina | Pirates | Greenville | NC | 1A | Conference USA | 56 | 69 | 0.448 | |
| 428 | Birmingham Southern | Panthers | Birmingham | AL | D3 | Southern Coll. Athl. | 21 | 26 | 0.447 | new program 2007 |
| 429 | Kansas | Jayhawks | Lawrence | KS | 1A | Big 12 | 54 | 67 | 0.446 | |
| 430 | Gettysburg | Bullets | Gettysburg | PA | D3 | Centennial | 45 | 56 | 0.446 | |
| 431 | St Augustine's | Falcons | Raleigh | NC | D2 | Central Intercollegiate | 44 | 55 | 0.444 | |
| 431 | Rhodes | Lynx | Memphis | TN | D3 | Southern Coll. Athl. | 44 | 55 | 0.444 | |
| 431 | Fitchburg St | Falcons | Fitchburg | MA | D3 | New England | 44 | 55 | 0.444 | |
| 434 | Sacred Heart | Pioneers | Fairfield | CT | 1AA | Northeast | 47 | 59 | 0.443 | |
| 435 | Florida Atlantic | Owls | Boca Raton | FL | 1A | Sun Belt | 54 | 68 | 0.443 | moved from 1AA to 1A in 2005 |
| 436 | Emporia St | Hornets | Emporia | KS | D2 | Mid-America Intercoll. | 49 | 62 | 0.441 | |
| 436 | Delaware St | Hornets | Dover | DE | 1AA | Mid-Eastern Athletic | 49 | 62 | 0.441 | |
| 438 | Ark-Pine Bluff | Golden Lions | Pine Bluff | AR | 1AA | Southwestern Athletic | 48 | 61 | 0.440 | |
| 439 | Howard Payne | Yellow Jackets | Brownwood | TX | D3 | American Southwest | 44 | 56 | 0.440 | |
| 439 | Defiance | Yellow Jackets | Defiance | OH | D3 | Heartland Coll. Athletic | 44 | 56 | 0.440 | |
| 441 | Miles | Golden Bears | Fairfield | AL | D2 | Southern Intercoll. | 47 | 60 | 0.439 | |
| 442 | North Carolina | Tar Heels | Chapel Hill | NC | 1A | Atlantic Coast | 54 | 69 | 0.439 | |
| 443 | Webber International | Warriors | Babson Park | FL | NAIA | NAIA Independents | 38 | 49 | 0.437 | new program 2003 |
| 444 | Portland St | Vikings | Portland | OR | 1AA | Big Sky | 48 | 62 | 0.436 | |
| 444 | Samford | Bulldogs | Birmingham | AL | 1AA | Southern | 48 | 62 | 0.436 | |
| 446 | McDaniel | Green Terror | Westminster | MD | D3 | Centennial | 44 | 57 | 0.436 | |
| 447 | Bethany KS | Terrible Swedes | Lindsborg | KS | NAIA | Kansas Coll. Athl. | 43 | 56 | 0.434 | |
| 448 | Fairmont St | Falcons | Fairmont | WV | D2 | West Virginia Intercoll. | 46 | 60 | 0.434 | |
| 449 | Malone | Pioneers | Canton | OH | D2 | D-II Independents | 45 | 59 | 0.433 | Moved from NAIA to D2 in 2011 |
| 450 | Mississippi College | Choctaws | Clinton | MS | D3 | American Southwest | 44 | 58 | 0.431 | |
| 450 | Benedictine IL | Eagles | Lisle | IL | D3 | Northern Athletic | 44 | 58 | 0.431 | |
| 452 | Princeton | Tigers | Princeton | NJ | 1AA | Ivy League | 43 | 57 | 0.430 | |
| 452 | Rochester | Yellow Jackets | Rochester | NY | D3 | Liberty League | 43 | 57 | 0.430 | |
| 452 | Westminster PA | Titans | New Wilmington | PA | D3 | The Presidents' Athl. | 43 | 57 | 0.430 | |
| 455 | Marist | Red Foxes | Poughkeepsie | NY | 1AA | Pioneer | 46 | 61 | 0.430 | |
| 456 | Tennessee-Martin | Skyhawks | Martin | TN | 1AA | Ohio Valley | 49 | 65 | 0.430 | |
| 457 | Middle Tennessee St | Blue Raiders | Murfreesboro | TN | 1A | Sun Belt | 52 | 69 | 0.430 | |
| 457 | Ball St | Cardinals | Muncie | IN | 1A | Mid-American | 52 | 69 | 0.430 | |
| 459 | Charleston Southern | Buccaneers | Charleston | SC | 1AA | Big South | 48 | 64 | 0.429 | |
| 459 | Castleton St | Spartans | Castleton | VT | D3 | East Coast | 12 | 16 | 0.429 | new program 2009 |
| 461 | William Jewell | Cardinals | Liberty | MO | D2 | D-II Independents | 44 | 59 | 0.427 | Moved from NAIA to D2 in 2011 |
| 462 | Minnesota-Morris | Cougars | Morris | MN | D3 | Upper Midwest Athl. | 42 | 57 | 0.424 | moved from D2 to D3 in 2005 |
| 463 | Colorado | Buffaloes | Boulder | CO | 1A | Pacific 12 | 53 | 72 | 0.424 | |
| 464 | Chapman | Panthers | Orange | CA | D3 | So. California Intercoll. | 39 | 53 | 0.424 | |
| 465 | Cumberland TN | Bulldogs | Lebanon | TN | NAIA | Mid-South | 44 | 60 | 0.423 | |
| 466 | Worcester Polytech | Engineers | Worcester | MA | D3 | Liberty League | 41 | 56 | 0.423 | |
| 467 | Louisiana-Lafayette | Ragin' Cajuns | Lafayette | LA | 1A | Sun Belt | 50 | 69 | 0.420 | |
| 468 | Gustavus Adolphus | Golden Gusties | St. Peter | MN | D3 | Minnesota Intercoll. | 42 | 58 | 0.420 | |
| 468 | Rockford | Regents | Rockford | IL | D3 | Northern Athletic | 42 | 58 | 0.420 | |
| 470 | Findlay | Oilers | Findlay | OH | D2 | Great Lakes Intercoll. | 46 | 64 | 0.418 | |
| 470 | Urbana | Blue Knights | Urbana | OH | D2 | Great Lakes Football | 46 | 64 | 0.418 | moved from NAIA to D2 in 2009 |
| 470 | Belhaven | Blazers | Jackson | MS | NAIA | Mid-South | 46 | 64 | 0.418 | |
| 473 | Alcorn St | Braves | Lorman | MS | 1AA | Southwestern Athletic | 45 | 63 | 0.417 | |
| 474 | Nicholls St | Colonels | Thibodaux | LA | 1AA | Southland | 44 | 62 | 0.415 | |
| 475 | Mount Ida | Mustangs | Newton Centre | MA | D3 | East Coast | 41 | 58 | 0.414 | |
| 476 | Arizona | Wildcats | Tucson | AZ | 1A | Pacific 12 | 50 | 71 | 0.413 | |
| 476 | Wyoming | Cowboys | Laramie | WY | 1A | Mountain West | 50 | 71 | 0.413 | |
| 478 | Eastern New Mexico | Greyhounds | Portales | NM | D2 | Lone Star | 45 | 64 | 0.413 | |
| 479 | Tennessee Tech | Golden Eagles | Cookeville | TN | 1AA | Ohio Valley | 46 | 66 | 0.411 | |
| 480 | Denison | Big Red | Granville | OH | D3 | North Coast Athletic | 41 | 59 | 0.410 | |
| 481 | Colorado St | Rams | Fort Collins | CO | 1A | Mountain West | 50 | 72 | 0.410 | |
| 482 | Georgia State | Panthers | Atlanta | GA | 1AA | I-AA Independents | 9 | 13 | 0.409 | new program 2010 |
| 482 | Mercyhurst | Lakers | Erie | PA | D2 | Pennsylvania State | 45 | 65 | 0.409 | |
| 482 | Lamar | Cardinals | Beaumont | TX | 1AA | Southland | 9 | 13 | 0.409 | new program 2010 |
| 485 | Davidson | Wildcats | Davidson | NC | 1AA | Pioneer | 42 | 61 | 0.408 | |
| 485 | Pikeville | Bears | Pikeville | KY | NAIA | Mid-South | 42 | 61 | 0.408 | |
| 485 | Graceland | Yellow Jackets | Lamoni | IA | NAIA | Heart of America | 42 | 61 | 0.408 | |
| 488 | Towson | Tigers | Towson | MD | 1AA | Colonial Athletic | 46 | 67 | 0.407 | |
| 488 | Tennessee St | Tigers | Nashville | TN | 1AA | Ohio Valley | 46 | 67 | 0.407 | |
| 490 | Iowa St | Cyclones | Ames | IA | 1A | Big 12 | 50 | 73 | 0.407 | |
| 491 | Washington St | Cougars | Pullman | WA | 1A | Pacific 12 | 49 | 72 | 0.405 | |
| 491 | UTEP | Miners | El Paso | TX | 1A | Conference USA | 49 | 72 | 0.405 | |
| 493 | Methodist | Monarchs | Fayetteville | NC | D3 | USA South | 40 | 59 | 0.404 | |
| 494 | Quincy | Hawks | Quincy | IL | NAIA | Mid-States | 44 | 65 | 0.404 | moved from D2 to NAIA in 2003 |
| 495 | New Mexico | Lobos | Albuquerque | NM | 1A | Mountain West | 50 | 74 | 0.403 | |
| 496 | Union KY | Bulldogs | Barbourville | KY | NAIA | Mid-South | 43 | 64 | 0.402 | |
| 497 | West Alabama | Tigers | Livingston | AL | D2 | Gulf South | 45 | 67 | 0.402 | |
| 498 | San Diego St | Aztecs | San Diego | CA | 1A | Mountain West | 49 | 73 | 0.402 | |
| 499 | UTSA | Roadrunners | San Antonio | TX | 1AA | I-AA Independents | 4 | 6 | 0.400 | new program 2011 |
| 499 | Bacone | Warriors | Muskogee | OK | NAIA | Central States | 42 | 63 | 0.400 | |
| 499 | Grove City | Wolverines | Grove City | PA | D3 | The Presidents' Athl. | 40 | 60 | 0.400 | |
| 499 | Anderson | Ravens | Anderson | IN | D3 | Heartland Coll. Athletic | 40 | 60 | 0.400 | |
| 503 | Bethel KS | Threshers | North Newton | KS | NAIA | Kansas Coll. Athl. | 39 | 59 | 0.398 | |
| 504 | Southern Oregon | Raiders | Ashland | OR | NAIA | NAIA Independents | 38 | 58 | 0.396 | |
| 505 | Missouri St | Bears | Springfield | MO | 1AA | Missouri Valley | 43 | 66 | 0.394 | |
| 505 | Olivet Nazarene | Tigers | Kankakee | IL | NAIA | Mid-States | 43 | 66 | 0.394 | |
| 507 | Maryville | Scots | Maryville | TN | D3 | USA South | 39 | 60 | 0.394 | |
| 508 | Dakota Wesleyan | Tigers | Mitchell | SD | NAIA | Great Plains Athl. | 40 | 62 | 0.392 | |
| 509 | Loras | Duhawks | Dubuque | IA | D3 | Iowa Intercollegiate | 39 | 61 | 0.390 | |
| 509 | Ohio Wesleyan | Battling Bishops | Delaware | OH | D3 | North Coast Athletic | 39 | 61 | 0.390 | |
| 511 | Murray St | Racers | Murray | KY | 1AA | Ohio Valley | 44 | 69 | 0.389 | |
| 512 | Benedict | Tigers | Columbia | SC | D2 | Southern Intercoll. | 42 | 66 | 0.389 | |
| 513 | Mississippi St | Bulldogs | Starkville | MS | 1A | Southeastern | 47 | 74 | 0.388 | |
| 514 | Coast Guard | Bears | New London | CT | D3 | New England | 36 | 57 | 0.387 | |
| 515 | Southern Arkansas | Muleriders | Magnolia | AR | D2 | Great American | 41 | 65 | 0.387 | |
| 516 | Susquehanna | Crusaders | Selinsgrove | PA | D3 | Centennial | 39 | 62 | 0.386 | |
| 516 | Shenandoah | Hornets | Winchester | VA | D3 | USA South | 39 | 62 | 0.386 | |
| 518 | King's PA | Monarchs | Wilkes Barre | PA | D3 | Middle Atlantic | 40 | 64 | 0.385 | |
| 519 | The Citadel | Bulldogs | Charleston | SC | 1AA | Southern | 43 | 69 | 0.384 | |
| 520 | UW-Platteville | Pioneers | Platteville | WI | D3 | Wisconsin Intercoll. | 38 | 61 | 0.384 | |
| 521 | Baylor | Bears | Waco | TX | 1A | Big 12 | 46 | 74 | 0.383 | |
| 522 | Lenoir-Rhyne | Bears | Hickory | NC | D2 | South Atlantic | 41 | 66 | 0.383 | |
| 522 | Gannon | Golden Knights | Erie | PA | D2 | Pennsylvania State | 41 | 66 | 0.383 | |
| 524 | Doane | Tigers | Crete | NE | NAIA | Great Plains Athl. | 39 | 63 | 0.382 | |
| 525 | Northern St | Wolves | Aberdeen | SD | D2 | Northern Sun Intercoll. | 42 | 68 | 0.382 | |
| 526 | Cornell | Big Red | Ithaca | NY | 1AA | Ivy League | 38 | 62 | 0.380 | |
| 526 | Beloit | Buccaneers | Beloit | WI | D3 | Midwest | 38 | 62 | 0.380 | |
| 528 | Peru St | Bobcats | Peru | NE | NAIA | Heart of America | 40 | 66 | 0.377 | |
| 529 | SE Missouri St | Redhawks | Cape Girardeau | MO | 1AA | Ohio Valley | 43 | 71 | 0.377 | |
| 530 | Memphis | Tigers | Memphis | TN | 1A | Conference USA | 46 | 76 | 0.377 | |
| 531 | Merchant Mar.-King's Pt | Mariners | King's Point | NY | D3 | Liberty League | 38 | 63 | 0.376 | |
| 532 | Wesleyan | Cardinals | Middletown | CT | D3-d | New England Small | 30 | 50 | 0.375 | Disconnected |
| 533 | Concordia AL | Hornets | Selma | AL | IND | Non-Affiliate | 23 | 39 | 0.371 | new in 2005. Moved to Ind in 2009 |
| 534 | Southeastern Louisiana | Lions | Hammond | LA | 1AA | Southland | 37 | 63 | 0.370 | re-started in 2003 |
| 534 | Texas Lutheran | Bulldogs | Seguin | TX | D3 | American Southwest | 37 | 63 | 0.370 | |
| 534 | Western Connecticut | Colonials | Danbury | CT | D3 | New Jersey Athl. | 37 | 63 | 0.370 | |
| 537 | Bucknell | Bison | Lewisburg | PA | 1AA | Patriot League | 41 | 70 | 0.369 | |
| 538 | Tiffin | Dragons | Tiffin | OH | D2 | Great Lakes Intercoll. | 40 | 69 | 0.367 | |
| 539 | Dubuque | Spartans | Dubuque | IA | D3 | Iowa Intercollegiate | 37 | 64 | 0.366 | |
| 540 | Montana St-Northern | Lights | Havre | MT | NAIA | Frontier | 38 | 66 | 0.365 | |
| 541 | Missouri Southern | Lions | Joplin | MO | D2 | Mid-America Intercoll. | 39 | 68 | 0.364 | |
| 541 | Angelo St | Rams | San Angelo | TX | D2 | Lone Star | 39 | 68 | 0.364 | |
| 543 | Louisiana-Monroe | Warhawks | Monroe | LA | 1A | Sun Belt | 43 | 75 | 0.364 | |
| 544 | Illinois | Fighting Illinis | Champaign | IL | 1A | Big 10 | 44 | 77 | 0.364 | |
| 544 | Truman St | Bulldogs | Kirksville | MO | D2 | Mid-America Intercoll. | 40 | 70 | 0.364 | |
| 544 | Southwest MN St | Mustangs | Marshall | MN | D2 | Northern Sun Intercoll. | 40 | 70 | 0.364 | |
| 544 | Missouri S&T | Miners | Rolla | MO | D2 | Great Lakes Football | 40 | 70 | 0.364 | |
| 544 | Lake Erie | Storm | Painesville | OH | D2 | Great Lakes Intercoll. | 16 | 28 | 0.364 | new program 2008 |
| 544 | Butler | Bulldogs | Indianapolis | IN | 1AA | Pioneer | 40 | 70 | 0.364 | |
| 544 | Concord | Mountain Lions | Athens | WV | D2 | West Virginia Intercoll. | 40 | 70 | 0.364 | |
| 551 | Concordia NE | Bulldogs | Seward | NE | NAIA | Great Plains Athl. | 37 | 65 | 0.363 | |
| 551 | Thiel | Tomcats | Greenville | PA | D3 | The Presidents' Athl. | 37 | 65 | 0.363 | |
| 553 | Husson | Braves | Bangor | ME | D3 | East Coast | 29 | 51 | 0.363 | new program 2003 |
| 554 | Crown | Storm | St. Bonifacius | MN | D3 | Upper Midwest Athl. | 34 | 60 | 0.362 | moved from NAIA to D3 in 2005 |
| 555 | UAB | Blazers | Birmingham | AL | 1A | Conference USA | 43 | 76 | 0.361 | |
| 555 | Rice | Owls | Houston | TX | 1A | Conference USA | 43 | 76 | 0.361 | |
| 555 | Akron | Zips | Akron | OH | 1A | Mid-American | 43 | 76 | 0.361 | |
| 558 | Washington | Huskies | Seattle | WA | 1A | Pacific 12 | 44 | 78 | 0.361 | |
| 559 | Olivet | Comets | Olivet | MI | D3 | Michigan Intercollegiate | 36 | 64 | 0.360 | |
| 560 | Syracuse | Orange | Syracuse | NY | 1A | Big East | 43 | 77 | 0.358 | |
| 560 | Temple | Owls | Philadelphia | PA | 1A | Mid-American | 43 | 77 | 0.358 | |
| 562 | Fort Hays St | Tigers | Hays | KS | D2 | Mid-America Intercoll. | 39 | 70 | 0.358 | |
| 562 | Ark-Monticello | Boll Weevils | Monticello | AR | D2 | Great American | 39 | 70 | 0.358 | |
| 562 | Montana-Western | Bulldogs | Dillon | MT | NAIA | Frontier | 39 | 70 | 0.358 | |
| 565 | CSU-Sacramento | Hornets | Sacramento | CA | 1AA | Big Sky | 40 | 72 | 0.357 | |
| 565 | St Mary KS | Spires | Leavenworth | KS | NAIA | Kansas Coll. Athl. | 35 | 63 | 0.357 | |
| 567 | Catholic | Cardinals | Washington | DC | D3 | Old Dominion Athl. | 36 | 65 | 0.356 | |
| 567 | MacMurray | Highlanders | Jacksonville | IL | D3 | Upper Midwest Athl. | 36 | 65 | 0.356 | |
| 569 | Kent St | Golden Flashes | Kent | OH | 1A | Mid-American | 42 | 76 | 0.356 | |
| 570 | Northern Michigan | Wildcats | Marquette | MI | D2 | Great Lakes Intercoll. | 37 | 67 | 0.356 | |
| 571 | Gallaudet | Bison | Washington | DC | D3 | East Coast | 17 | 31 | 0.354 | re-started in 2007 |
| 572 | San Jose St | Spartans | San Jose | CA | 1A | Western Athletic | 42 | 78 | 0.350 | |
| 572 | Augsburg | Auggies | Minneapolis | MN | D3 | Minnesota Intercoll. | 35 | 65 | 0.350 | |
| 572 | Marietta | Pioneers | Marietta | OH | D3 | Ohio Athletic | 35 | 65 | 0.350 | |
| 572 | Tufts | Jumbos | Medford | MA | D3-d | New England Small | 28 | 52 | 0.350 | Disconnected |
| 572 | Bowdoin | Polar Bears | Brunswick | ME | D3-d | New England Small | 28 | 52 | 0.350 | Disconnected |
| 577 | Texas A&M-Commerce | Lions | Commerce | TX | D2 | Lone Star | 36 | 67 | 0.350 | |
| 578 | Central Methodist | Eagles | Fayette | MO | NAIA | Heart of America | 37 | 69 | 0.349 | |
| 579 | Southwestern Okla St | Bulldogs | Weatherford | OK | D2 | Great American | 38 | 71 | 0.349 | |
| 580 | Salve Regina | Seahawks | Newport | RI | D3 | New England | 33 | 62 | 0.347 | |
| 581 | North Texas | Mean Green | Denton | TX | 1A | Sun Belt | 42 | 79 | 0.347 | |
| 582 | Assumption | Greyhounds | Worcester | MA | D2 | Northeast-10 | 36 | 68 | 0.346 | |
| 583 | Howard | Bison | Washington | DC | 1AA | Mid-Eastern Athletic | 38 | 72 | 0.345 | |
| 584 | Southern Methodist | Mustangs | Dallas | TX | 1A | Conference USA | 42 | 80 | 0.344 | |
| 584 | LaGrange | Panthers | LaGrange | GA | D3 | D-III Independents | 21 | 40 | 0.344 | new program 2006 |
| 586 | Menlo | Oaks | Atherton | CA | NAIA | NAIA Independents | 34 | 65 | 0.343 | moved from D3 to NAIA in 2010 |
| 587 | McMurry | Indians | Abilene | TX | D3 | American Southwest | 35 | 67 | 0.343 | |
| 588 | Trinity International | Trojans | Deerfield | IL | NAIA | Mid-States | 37 | 71 | 0.343 | |
| 589 | Utica | Pioneers | Utica | NY | D3 | Empire Eight | 34 | 66 | 0.340 | |
| 589 | Wisconsin Lutheran | Warriors | Milwaukee | WI | D3 | Northern Athletic | 34 | 66 | 0.340 | |
| 589 | Southwestern KS | Moundbuilders | Winfield | KS | NAIA | Kansas Coll. Athl. | 34 | 66 | 0.340 | |
| 589 | Grinnell | Pioneers | Grinnell | IA | D3 | Midwest | 34 | 66 | 0.340 | |
| 589 | Concordia IL | Cougars | River Forest | IL | D3 | Northern Athletic | 34 | 66 | 0.340 | |
| 594 | St Francis IL | Fighting Saints | Joliet | IL | NAIA | Mid-States | 37 | 72 | 0.339 | |
| 595 | Western New Mexico | Mustangs | Silver City | NM | D2 | Rocky Mountain | 34 | 67 | 0.337 | |
| 596 | Nichols | Bison | Dudley | MA | D3 | New England | 32 | 64 | 0.333 | |
| 596 | Framingham St | Rams | Framingham | MA | D3 | New England | 32 | 64 | 0.333 | |
| 598 | Florida International | Golden Panthers | Miami | FL | 1A | Sun Belt | 39 | 79 | 0.331 | moved from 1AA to 1A in 2005 |
| 599 | Southern Utah | Thunderbirds | Cedar City | UT | 1AA | Great West | 36 | 73 | 0.330 | |
| 600 | Oberlin | Yeomen | Oberlin | OH | D3 | North Coast Athletic | 33 | 67 | 0.330 | |
| 601 | SW Baptist | Bearcats | Bolivar | MO | D2 | D-II Independents | 36 | 74 | 0.327 | |
| 602 | East Central | Tigers | Ada | OK | D2 | Great American | 35 | 72 | 0.327 | |
| 603 | Frostburg St | Bobcats | Frostburg | MD | D3 | Empire Eight | 32 | 66 | 0.327 | |
| 603 | Austin | Kangaroos | Sherman | TX | D3 | Southern Coll. Athl. | 32 | 66 | 0.327 | |
| 603 | Kalamazoo | Hornets | Kalamazoo | MI | D3 | Michigan Intercollegiate | 32 | 66 | 0.327 | |
| 606 | Tulane | Green Wave | New Orleans | LA | 1A | Conference USA | 39 | 81 | 0.325 | |
| 607 | Austin Peay | Governors | Clarksville | TN | 1AA | Ohio Valley | 36 | 75 | 0.324 | |
| 608 | Stonehill | Skyhawks | North Easton | MA | D2 | Northeast-10 | 33 | 69 | 0.324 | |
| 609 | Texas Southern | Tigers | Houston | TX | 1AA | Southwestern Athletic | 36 | 76 | 0.321 | |
| 610 | Clarion | Golden Eagles | Clarion | PA | D2 | Pennsylvania State | 35 | 74 | 0.321 | |
| 611 | Fort Lewis | Skyhawks | Durango | CO | D2 | Rocky Mountain | 34 | 72 | 0.321 | |
| 612 | William Paterson | Pioneers | Wayne | NJ | D3 | New Jersey Athl. | 32 | 68 | 0.320 | |
| 612 | Guilford | Quakers | Greensboro | NC | D3 | Old Dominion Athl. | 32 | 68 | 0.320 | |
| 614 | Chattanooga | Moccasins | Chattanooga | TN | 1AA | Southern | 36 | 77 | 0.319 | |
| 615 | Northern Colorado | Bears | Greeley | CO | 1AA | Big Sky | 36 | 78 | 0.316 | moved from D2 to 1AA in 2004 |
| 616 | Millersville | Marauders | Millersville | PA | D2 | Pennsylvania State | 34 | 74 | 0.315 | |
| 617 | Pomona-Pitzer | Sagehens | Claremont | CA | D3 | So. California Intercoll. | 28 | 61 | 0.315 | |
| 618 | Macalester | Scots | St. Paul | MN | D3 | D-III Independents | 29 | 64 | 0.312 | |
| 619 | Indiana | Hoosiers | Bloomington | IN | 1A | Big 10 | 37 | 82 | 0.311 | |
| 620 | Carleton | Knights | Northfield | MN | D3 | Minnesota Intercoll. | 31 | 69 | 0.310 | |
| 621 | Vanderbilt | Commodores | Nashville | TN | 1A | Southeastern | 37 | 83 | 0.308 | |
| 622 | South Dakota Tech | Hardrockers | Rapid City | SD | D2 | D-II Independents | 31 | 70 | 0.307 | Moved from NAIA to D2 in 2011 |
| 623 | Brevard | Tornadoes | Brevard | NC | D2 | South Atlantic | 19 | 43 | 0.306 | new program 2006 |
| 624 | Apprentice-Nwpt News | Ship Builders | Newport News | VA | D3 | D-III Independents | 29 | 66 | 0.305 | |
| 625 | West Virginia St | Yellow Jackets | Institute | WV | D2 | West Virginia Intercoll. | 32 | 73 | 0.305 | |
| 626 | Edward Waters | Tigers | Jacksonville | FL | NAIA | NAIA Independents | 28 | 64 | 0.304 | |
| 627 | Idaho St | Bengals | Pocatello | ID | 1AA | Big Sky | 34 | 78 | 0.304 | |
| 628 | Northeastern St OK | Redmen | Tahlequah | OK | D2 | D-II Independents | 32 | 74 | 0.302 | |
| 628 | Panhandle St | Aggies | Goodwell | OK | D2 | D-II Independents | 32 | 74 | 0.302 | |
| 630 | Rhode Island | Rams | Kingston | RI | 1AA | Colonial Athletic | 34 | 79 | 0.301 | |
| 631 | Georgetown DC | Hoyas | Washington | DC | 1AA | Patriot League | 33 | 77 | 0.300 | |
| 631 | Incarnate Word | Cardinals | San Antonio | TX | D2 | Lone Star | 9 | 21 | 0.300 | new program 2009 |
| 631 | Bethany WV | Bison | Bethany | WV | D3 | The Presidents' Athl. | 30 | 70 | 0.300 | |
| 634 | Presentation | Saints | Aberdeen | SD | D3 | Upper Midwest Athl. | 3 | 7 | 0.300 | new program 2011 |
| 635 | St Lawrence | Saints | Canton | NY | D3 | Liberty League | 29 | 68 | 0.299 | |
| 636 | Rocky Mountain | Bears | Billings | MT | NAIA | Frontier | 32 | 76 | 0.296 | |
| 637 | Campbell | Camels | Buies Creek | NC | 1AA | Pioneer | 13 | 31 | 0.295 | new program 2008 |
| 638 | Taylor | Trojans | Upland | IN | NAIA | Mid-States | 30 | 72 | 0.294 | |
| 639 | Mississippi Valley St | Delta Devils | Itta Bena | MS | 1AA | Southwestern Athletic | 32 | 77 | 0.294 | |
| 640 | La Verne | Leopards | La Verne | CA | D3 | So. California Intercoll. | 26 | 63 | 0.292 | |
| 641 | Dartmouth | Big Green | Hanover | NH | 1AA | Ivy League | 29 | 71 | 0.290 | |
| 642 | Lane | Dragons | Jackson | TN | D2 | Southern Intercoll. | 30 | 74 | 0.288 | |
| 643 | Utah St | Aggies | Logan | UT | 1A | Western Athletic | 34 | 84 | 0.288 | |
| 644 | Maranatha Baptist | Bible Crusaders | Watertown | WI | D3 | Northern Athletic | 27 | 67 | 0.287 | |
| 645 | New Mexico St | Aggies | Las Cruces | NM | 1A | Western Athletic | 35 | 87 | 0.287 | |
| 646 | North Carolina A&T | Aggies | Greensboro | NC | 1AA | Mid-Eastern Athletic | 32 | 80 | 0.286 | |
| 646 | Puget Sound | Loggers | Tacoma | WA | D3 | Northwest | 26 | 65 | 0.286 | |
| 646 | Notre Dame OH | Falcons | South Euclid | OH | D2 | D-II Independents | 6 | 15 | 0.286 | new program 2010 |
| 649 | Heidelberg | Student Princes | Tiffin | OH | D3 | Ohio Athletic | 28 | 72 | 0.280 | |
| 650 | Texas College | Steers | Tyler | TX | NAIA | Central States | 25 | 65 | 0.278 | new program 2003 |
| 651 | UNLV | Runnin' Rebels | Las Vegas | NV | 1A | Mountain West | 33 | 86 | 0.277 | |
| 652 | MIT | Engineers | Cambridge | MA | D3 | New England | 25 | 66 | 0.275 | |
| 653 | Avila | Eagles | Kansas City | MO | NAIA | Heart of America | 29 | 77 | 0.274 | |
| 654 | Idaho | Vandals | Moscow | ID | 1A | Western Athletic | 33 | 88 | 0.273 | |
| 654 | Western Carolina | Catamounts | Cullowhee | NC | 1AA | Southern | 30 | 80 | 0.273 | |
| 654 | Buffalo St | Bengals | Buffalo | NY | D3 | New Jersey Athl. | 27 | 72 | 0.273 | |
| 657 | West Georgia | Braves | Carrollton | GA | D2 | Gulf South | 28 | 75 | 0.272 | |
| 658 | Valparaiso | Crusaders | Valparaiso | IN | 1AA | Pioneer | 30 | 81 | 0.270 | |
| 659 | Muskingum | Muskies | New Concord | OH | D3 | Ohio Athletic | 27 | 73 | 0.270 | |
| 659 | Manchester | Spartans | North Manchester | IN | D3 | Heartland Coll. Athletic | 27 | 73 | 0.270 | |
| 659 | Bluffton | Beavers | Bluffton | OH | D3 | Heartland Coll. Athletic | 27 | 73 | 0.270 | |
| 662 | Sewanee | Tigers | Sewanee | TN | D3 | Southern Coll. Athl. | 26 | 72 | 0.265 | |
| 663 | Johnson C. Smith | Golden Bulls | Charlotte | NC | D2 | Central Intercollegiate | 27 | 75 | 0.265 | |
| 664 | Earlham | Hustlin' Quakers | Richmond | IN | D3 | Heartland Coll. Athletic | 26 | 74 | 0.260 | |
| 665 | Seton Hill | Griffins | Greensburg | PA | D2 | West Virginia Intercoll. | 20 | 57 | 0.260 | new- '05 moved NAIA to D2 '07 |
| 666 | VMI | Keydets | Lexington | VA | 1AA | Big South | 29 | 83 | 0.259 | |
| 667 | Army | Black Knights | West Point | NY | 1A | I-A Independents | 31 | 89 | 0.258 | |
| 668 | Sul Ross St | Lobos | Alpine | TX | D3 | American Southwest | 25 | 73 | 0.255 | |
| 669 | Clark Atlanta | Panthers | Atlanta | GA | D2 | Southern Intercoll. | 26 | 76 | 0.255 | |
| 670 | Eastern Michigan | Eagles | Ypsilanti | MI | 1A | Mid-American | 30 | 88 | 0.254 | |
| 671 | UW-River Falls | Falcons | River Falls | WI | D3 | Wisconsin Intercoll. | 25 | 74 | 0.253 | |
| 672 | Buffalo | Bulls | Buffalo | NY | 1A | Mid-American | 30 | 90 | 0.250 | |
| 672 | Columbia | Lions | New York | NY | 1AA | Ivy League | 25 | 75 | 0.250 | |
| 672 | Greensboro | Pride | Greensboro | NC | D3 | USA South | 25 | 75 | 0.250 | |
| 672 | Knox | Prairie Fire | Galesburg | IL | D3 | Midwest | 25 | 75 | 0.250 | |
| 676 | Western St | Mountaineers | Gunnison | CO | D2 | Rocky Mountain | 27 | 82 | 0.248 | |
| 677 | Lewis & Clark | Pioneers | Portland | OR | D3 | Northwest | 21 | 64 | 0.247 | |
| 678 | Mass-Maritime | Buccaneers | Buzzards Bay | MA | D3 | New England | 23 | 71 | 0.245 | |
| 679 | Lawrence | Vikings | Appleton | WI | D3 | Midwest | 24 | 75 | 0.242 | |
| 680 | MSU-Moorhead | Dragons | Moorhead | MN | D2 | Northern Sun Intercoll. | 26 | 82 | 0.241 | |
| 681 | Hamline | Pipers | St. Paul | MN | D3 | Minnesota Intercoll. | 24 | 76 | 0.240 | |
| 681 | FDU-Florham | Devils | Madison | NJ | D3 | Middle Atlantic | 24 | 76 | 0.240 | |
| 683 | Bates | Bobcats | Lewiston | ME | D3-d | New England Small | 19 | 61 | 0.238 | Disconnected |
| 684 | Haskell | Indians | Lawrence | KS | NAIA | NAIA Independents | 24 | 79 | 0.233 | |
| 685 | Dakota St | Trojans | Madison | SD | NAIA | NAIA Independents | 23 | 76 | 0.232 | |
| 686 | Dixie St | Rebels | St. George | UT | D2 | Great Northwest Athl. | 15 | 50 | 0.231 | new program 2006 |
| 687 | Indiana St | Sycamores | Terre Haute | IN | 1AA | Missouri Valley | 26 | 87 | 0.230 | |
| 688 | Briar Cliff | Chargers | Sioux City | IA | NAIA | Great Plains Athl. | 22 | 75 | 0.227 | new program 2003 |
| 689 | Upper Iowa | Peacocks | Fayette | IA | D2 | Northern Sun Intercoll. | 24 | 83 | 0.224 | moved from D3 to D2 in 2004 |
| 690 | Whittier | Poets | Whittier | CA | D3 | So. California Intercoll. | 20 | 70 | 0.222 | |
| 690 | SW Assemblies of God | Lions | Waxahachie | TX | NAIA | Central States | 22 | 77 | 0.222 | |
| 690 | Eureka | Red Devils | Eureka | IL | D3 | Upper Midwest Athl. | 22 | 77 | 0.222 | |
| 693 | Kentucky Wesleyan | Panthers | Owensboro | KY | D2 | Great Lakes Football | 23 | 82 | 0.219 | D2 to NAIA in '04 back D2 in '06 |
| 694 | New Mexico Highlands | Cowboys | Las Vegas | NM | D2 | Rocky Mountain | 23 | 85 | 0.213 | |
| 695 | Southern Virginia | Knights | Buena Vista | VA | NAIA | NAIA Independents | 17 | 63 | 0.213 | new program 2003 |
| 696 | Duke | Blue Devils | Durham | NC | 1A | Atlantic Coast | 25 | 93 | 0.212 | |
| 697 | Cornell IA | Rams | Mt. Vernon | IA | D3 | Iowa Intercollegiate | 21 | 79 | 0.210 | |
| 698 | Kenyon | Lords | Gambier | OH | D3 | North Coast Athletic | 21 | 80 | 0.208 | |
| 699 | Central State | Marauders | Wilberforce | OH | D2 | D-II Independents | 13 | 52 | 0.200 | re-started in 2005 |
| 699 | Wilmington | Quakers | Wilmington | OH | D3 | Ohio Athletic | 20 | 80 | 0.200 | |
| 699 | St Anselm | Hawks | Manchester | NH | D2 | Northeast-10 | 20 | 80 | 0.200 | |
| 699 | Stevenson | Mustangs | Owings Mills | MD | D3 | Middle Atlantic | 2 | 8 | 0.200 | new program 2011 |
| 699 | Hamilton | Continentals | Clinton | NY | D3-d | New England Small | 16 | 64 | 0.200 | Disconnected |
| 704 | Faulkner | Eagles | Montgomery | AL | NAIA | Mid-South | 10 | 41 | 0.196 | new program 2007 |
| 704 | St Vincent | Bearcats | Latrobe | PA | D3 | The Presidents' Athl. | 10 | 41 | 0.196 | new program 2007 |
| 706 | St Francis PA | Red Flash | Loretto | PA | 1AA | Northeast | 20 | 86 | 0.189 | |
| 707 | West Virginia Tech | Golden Bears | Montgomery | WV | NAIA | Mid-South | 20 | 88 | 0.185 | moved from D2 to NAIA in 2006 |
| 708 | Pace | Setters | Pleasantville | NY | D2 | Northeast-10 | 18 | 82 | 0.180 | |
| 709 | Culver-Stockton | Wildcats | Canton | MO | NAIA | Heart of America | 19 | 87 | 0.179 | |
| 709 | Iowa Wesleyan | Tigers | Mount Pleasant | IA | NAIA | Mid-States | 19 | 87 | 0.179 | |
| 711 | Mayville St | Comets | Mayville | ND | NAIA | Dakota Athletic | 18 | 83 | 0.178 | |
| 712 | Lincoln MO | Blue Tigers | Jefferson City | MO | D2 | Mid-America Intercoll. | 18 | 84 | 0.176 | |
| 713 | Chowan | Braves | Murfreesboro | NC | D2 | Central Intercollegiate | 17 | 83 | 0.170 | moved from D3 to D2 in 2005 |
| 714 | Waldorf | Warriors | Forest City | IA | NAIA | Mid-States | 16 | 79 | 0.168 | new program 2003 |
| 715 | North Park | Vikings | Chicago | IL | D3 | Conf.of Ill. and Wisc. | 16 | 84 | 0.160 | |
| 716 | Simon Fraser | Clan | Burnaby | BC | D2 | Great Northwest Athl. | 3 | 16 | 0.158 | new program 2010 |
| 717 | Lincoln PA | Lions | Lincoln University | PA | D2 | Central Intercollegiate | 6 | 33 | 0.154 | new program 2008 |
| 718 | Morrisville St | Mustangs | Morrisville | NY | D3 | New Jersey Athl. | 9 | 50 | 0.153 | new program 2006 |
| 719 | Juniata | Eagles | Huntingdon | PA | D3 | Centennial | 15 | 85 | 0.150 | |
| 720 | Kentucky Christian | Knights | Grayson | KY | NAIA | Mid-South | 6 | 37 | 0.140 | new program 2008 |
| 721 | Savannah St | Tigers | Savannah | GA | 1AA | Mid-Eastern Athletic | 15 | 93 | 0.139 | |
| 721 | Lock Haven | Bald Eagles | Lock Haven | PA | D2 | Pennsylvania State | 15 | 93 | 0.139 | |
| 723 | Minnesota-Crookston | Golden Eagles | Crookston | MN | D2 | Northern Sun Intercoll. | 13 | 95 | 0.120 | |
| 724 | Livingstone | Blue Bears | Salisbury | NC | D2 | Central Intercollegiate | 12 | 88 | 0.120 | |
| 725 | Becker | Hawks | Leicester | MA | D3 | East Coast | 7 | 58 | 0.108 | new program 2005 |
| 726 | Trinity Bible | Lions | Ellendale | ND | IND | Non-Affiliate | 8 | 75 | 0.096 | moved from NAIA to Ind in 2003 |
| 727 | Dordt | Defenders | Sioux Center | IA | NAIA | Great Plains Athl. | 4 | 39 | 0.093 | new program 2008 |
| 728 | Cheyney | Wolves | Cheyney | PA | D2 | Pennsylvania State | 9 | 101 | 0.082 | |
| 729 | Hiram | Terriers | Hiram | OH | D3 | North Coast Athletic | 7 | 93 | 0.070 | |
| 730 | Anna Maria | Amcats | Paxton | MA | D3 | East Coast | 2 | 27 | 0.069 | new program 2009 |
| 731 | Pacific OR | Boxers | Forest Grove | OR | D3 | Northwest | 1 | 17 | 0.056 | new program 2010 |
| 732 | Concordia MI | Cardinals | Ann Arbor | MI | NAIA | Mid-States | 0 | 11 | 0.000 | new program 2011 |
| 732 | Ave Maria | Gyrenes | Ave Maria | FL | NAIA | NAIA Independents | 0 | 9 | 0.000 | new program 2011 |
| Rank | Defunct Teams | Nicknames | City | St | DEFUNCT | Last Conference | W | L | Pct | Notes |
| 1 | Nebraska-Omaha | Mavericks | Omaha | NE | DEFUNCT | Mid-America Intercoll. | 67 | 33 | 0.670 | Last Season 2010 |
| 2 | Lambuth | Eagles | Jackson | TN | DEFUNCT | D-II Independents | 56 | 44 | 0.560 | Last Season 2010 |
| 3 | Western Washington | Vikings | Bellingham | WA | DEFUNCT | Great Northwest Athl. | 33 | 39 | 0.458 | Last Season 2008 |
| 4 | Fairfield | Staggs | Fairfield | CT | DEFUNCT | Metro Atlantic | 5 | 6 | 0.455 | Last Season 2002 |
| 5 | Hofstra | Pride | Hempstead | NY | DEFUNCT | Colonial Athletic | 38 | 52 | 0.422 | Last season 2009 |
| 6 | Northeastern | Huskies | Boston | MA | DEFUNCT | Colonial Athletic | 38 | 54 | 0.413 | Last season 2009 |
| 7 | Iona | Gaels | New Rochelle | NY | DEFUNCT | I-AA Independents | 29 | 45 | 0.392 | Last Season 2008 |
| 8 | East Tennessee St | Buccaneers | Johnson City | TN | DEFUNCT | Southern | 9 | 15 | 0.375 | Last Season 2003 |
| 9 | Si Tanka-Huron | Screaming Eagles | Huron | SD | DEFUNCT | Dakota Athletic | 11 | 19 | 0.367 | Last Season 2004 |
| 10 | St Paul's | Fighting Tigers | Lawrenceville | VA | DEFUNCT | Central Intercollegiate | 21 | 37 | 0.362 | new program 2005/Last Season 2010 |
| 11 | Allen | Yellow Jackets | Columbia | SC | DEFUNCT | NAIA Independent | 9 | 20 | 0.310 | Last Season 2005 |
| 12 | St Peter's | Peacocks | Jersey City | NJ | DEFUNCT | Metro Atlantic | 15 | 36 | 0.294 | Last Season 2006 |
| 13 | St Mary's CA | Gaels | Moraga | CA | DEFUNCT | Independent | 7 | 17 | 0.292 | Last Season 2003 |
| 14 | Paul Quinn | Tigers | Dallas | TX | DEFUNCT | NAIA Independents | 10 | 26 | 0.278 | Last Season 2006 |
| 15 | Dana | Vikings | Blair | NE | DEFUNCT | Great Plains Athl. | 24 | 63 | 0.276 | Last season 2009 |
| 16 | Mass-Lowell | River Hawks | Lowell | MA | DEFUNCT | Northeast-10 | 3 | 8 | 0.273 | Last Season 2002 |
| 17 | Blackburn | Battlin' Beavers | Carlinville | IL | DEFUNCT | St. Louis Intercollegiate | 18 | 52 | 0.257 | Last Season 2008 |
| 18 | Mansfield | Mountaineers | Mansfield | PA | DEFUNCT | Pennsylvania State | 13 | 39 | 0.250 | Last Season 2006 |
| 19 | Colorado College | Tigers | Colorado Springs | CO | DEFUNCT | Southern Coll. Athl. | 16 | 50 | 0.242 | Last Season 2008 |
| 20 | La Salle | Explorers | Philadelphia | PA | DEFUNCT | Metro Atlantic | 15 | 48 | 0.238 | Last Season 2007 |
| 21 | Principia | Panthers | Elsah | IL | DEFUNCT | St. Louis Intercollegiate | 13 | 51 | 0.203 | Last Season 2008 |
| 22 | St John's NY | Red Storm | New York | NY | DEFUNCT | Metro Atlantic | 2 | 8 | 0.200 | Last Season 2002 |
| 23 | Canisius | Golden Griffins | Buffalo | NY | DEFUNCT | Metro Atlantic | 2 | 9 | 0.182 | Last Season 2002 |
| 24 | Siena | Saints | Loudonville | NY | DEFUNCT | Metro Atlantic | 3 | 18 | 0.143 | Last Season 2003 |
| 25 | New Jersey City | Knights | Jersey City | NJ | DEFUNCT | New Jersey Athl. | 1 | 8 | 0.111 | Last Season 2002 |
| 26 | Morris Brown | Wolverines | Atlanta | GA | DEFUNCT | Independent | 1 | 11 | 0.083 | Last Season 2002 |